Ghent University Academic Bibliography

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MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

Surya Gupta (UGent) , Veronic De Puysseleyr, José Van Der Heyden (UGent) , Davy Maddelein (UGent) , Irma Lemmens (UGent) , Sam Lievens (UGent) , Sven Degroeve (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2017) BIOINFORMATICS. 33(9). p.1424-1425
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sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

Kevin Titeca (UGent) , Pieter Meysman, Kris Laukens, Lennart Martens (UGent) , Jan Tavernier (UGent) and Sven Eyckerman (UGent)

(2017) BIOINFORMATICS. 33(12). p.1902-1904
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decodeRNA-predicting non-coding RNA functions using guilt-by-association

Steve Lefever (UGent) , Jasper Anckaert (UGent) , Pieter-Jan Volders (UGent) , Manuel Luypaert (UGent) , Jo Vandesompele (UGent) and Pieter Mestdagh (UGent)

(2017) DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
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AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2017) BIOINFORMATICS. 33(10). p.1464-1472
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OMSim : a simulator for optical map data

Giles Miclotte (UGent) , Stéphane Plaisance (UGent) , Stephane Rombauts (UGent) , Yves Van de Peer (UGent) , Pieter Audenaert (UGent) and Jan Fostier (UGent)

(2017) BIOINFORMATICS. 33(17). p.2740-2742
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Numerical modeling of percutaneous auricular vagus nerve stimulation : a realistic 3D model to evaluate sensitivity of neural activation to electrode position

Mohammed Samoudi (UGent) , Stefan Kampusch, Emmeric Tanghe (UGent) , Jozsef C. Szeles, Luc Martens (UGent) , Eugenijus Kaniusas and Wout Joseph (UGent)

(2017) MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING. 55(10). p.1763-1772
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Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

Duc-Hau Le Duc-Hau Le, Lieven Verbeke (UGent) , Le Hoang Son Le Hoang Son, Dinh-Toi Chu Dinh-Toi Chu and Van-Huy Pham Van-Huy Pham

(2017) BMC BIOINFORMATICS. 18.
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Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2017) BMC BIOINFORMATICS. 18.
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High-throughput PCR assay design for targeted resequencing using primerXL

Steve Lefever (UGent) , Filip Pattyn, Bram De Wilde (UGent) , Frauke Coppieters (UGent) , Sarah De Keulenaer (UGent) , JAN HELLEMANS (UGent) and Jo Vandesompele (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

Bart Broeckx (UGent) , Luc Peelman (UGent) , Jimmy Saunders (UGent) , Dieter Deforce (UGent) and Lieven Clement (UGent)

(2017) BMC BIOINFORMATICS. 18.

Academic Bibliography

MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

decodeRNA-predicting non-coding RNA functions using guilt-by-association

AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

OMSim : a simulator for optical map data

Numerical modeling of percutaneous auricular vagus nerve stimulation : a realistic 3D model to evaluate sensitivity of neural activation to electrode position

Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

High-throughput PCR assay design for targeted resequencing using primerXL

Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

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