Ghent University Academic Bibliography

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A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling

Eric de Bony de Lavergne (UGent) , Fien Gysens (UGent) , Nurten Yigit (UGent) , Jasper Anckaert (UGent) , Celine Everaert (UGent) , Eveline Vanden Eynde (UGent) , Kimberly Verniers (UGent) , Willem van Snippenberg (UGent) , Wim Trypsteen (UGent) and Pieter Mestdagh (UGent)

(2022) BIOTECHNOLOGY JOURNAL. 17(9).
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Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

Annelies Bogaert (UGent) , Daria Fijalkowska (UGent) , An Staes (UGent) , Tessa Van de Steene (UGent) , Hans Demol (UGent) and Kris Gevaert (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition

Johannes Bues, Marjan Biocanin, Joern Pezoldt, Riccardo Dainese, Antonius Chrisnandy, Saba Rezakhani, Wouter Saelens, Vincent Gardeux, Revant Gupta, Rita Sarkis, et al.

(2022) NATURE METHODS. 19(3). p.323-330
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PeacoQC : peak-based selection of high quality cytometry data

Annelies Emmaneel (UGent) , Katrien Quintelier (UGent) , Dorine Sichien (UGent) , Paulina Rybakowska, Concepcion Maranon, Marta E. Alarcon-Riquelme, Gert Van Isterdael (UGent) , Sofie Van Gassen (UGent) and Yvan Saeys (UGent)

(2022) CYTOMETRY PART A. 101(4). p.325-338
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A checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist) : a consensus study and statement

Hamed Ekhtiari, Peyman Ghobadi-Azbari, Axel Thielscher, Andrea Antal, Lucia M. Li, A. Duke Shereen, Yuranny Cabral-Calderin, Daniel Keeser, Til Ole Bergmann, Asif Jamil, et al.

(2022) NATURE PROTOCOLS. 17(3). p.596-617
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BioCCP.jl : collecting coupons in combinatorial biotechnology

Kirsten Van Huffel (UGent) , Michiel Stock (UGent) and Bernard De Baets (UGent)

(2022) BIOINFORMATICS. 38(4). p.1144-1145
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CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603
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A multi-omics study to boost continuous bolaform sophorolipid production

Sven Dierickx (UGent) , Karolien Maes, Sophie Roelants (UGent) , Beata Pomian (UGent) , Lieven Van Meulebroek (UGent) , Sofie De Maeseneire (UGent) , Lynn Vanhaecke (UGent) and Wim Soetaert (UGent)

(2022) NEW BIOTECHNOLOGY. 66. p.107-115

Academic Bibliography

A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition

PeacoQC : peak-based selection of high quality cytometry data

A checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist) : a consensus study and statement

BioCCP.jl : collecting coupons in combinatorial biotechnology

CpG transformer for imputation of single-cell methylomes

A multi-omics study to boost continuous bolaform sophorolipid production

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