Ghent University Academic Bibliography

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Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Bram Bloemen (UGent) , Maud Delvoye, Stefan Hoffman, Kathleen Marchal (UGent) , Kevin Vanneste (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2026) MSYSTEMS. 11(2).
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Quantifying synthetic bacterial community composition with flow cytometry : efficacy in mock communities and challenges in co-cultures

Fabian Mermans (UGent) , Ioanna Chatzigiannidou, Wim Teughels and Nico Boon (UGent)

(2025) MSYSTEMS. 10(1).
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Year-long, multiple-timepoint field studies show the importance of spatiotemporal dynamics and microbial functions in agricultural soil microbiomes

Lisa Joos (UGent) , Sarah Ommeslag, Steve Baeyen, Wouter Asselberg, Koen Van Loo, Lieven Clement (UGent) , Jane Debode, Bart Vandecasteele and Caroline De Tender (UGent)

(2025) MSYSTEMS. 10(7).
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Differential recovery of chain-elongating bacteria : comparing droplet, plating, and dilution-to-extinction methods

Wannes Nauwynck (UGent) , Myrsini Sakarika (UGent) , Karoline Faust and Nico Boon (UGent)

(2025) MSYSTEMS. 10(11).
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Lack of abundant core virome in Culex mosquitoes from a temperate climate region despite a mosquito species-specific virome

Lander De Coninck, Alina Soto, Lanjiao Wang, Katrien De Wolf (UGent) , Nathalie Smitz, Isra Deblauwe, Karelle Celes Mbigha Donfack, Ruth Müller, Leen Delang and Jelle Matthijnssens

(2024) MSYSTEMS. 9(6).
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Charting the lipopeptidome of nonpathogenic Pseudomonas

Catherine Cesa-Luna, Niels Geudens (UGent) , Lea Girard, Vic De Roo, Hassan R. Maklad, José Martins (UGent) , Monica Höfte (UGent) and Rene De Mot

(2023) MSYSTEMS. 8(1).
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A high dose of dietary berberine improves gut wall morphology, despite an expansion of enterobacteriaceae and a reduction in beneficial microbiota in broiler chickens

Tessa Dehau, Marc Cherlet (UGent) , Siska Croubels (UGent) , Filip Van Immerseel (UGent) and Evy Goossens (UGent)

(2023) MSYSTEMS. 8(1).
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Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveal taxonomic and functional diversity

Luc Cornet, Ilse Cleenwerck (UGent) , Jessy Praet (UGent) , Raphaël R. Leonard, Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) , Denis Baurain and Peter Vandamme (UGent)

(2022) MSYSTEMS. 7(3).
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Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting

Jasmine Heyse (UGent) , Florian Schattenberg, Peter Rubbens, Susann Müller, Willem Waegeman (UGent) , Nico Boon (UGent) and Ruben Props (UGent)

(2021) MSYSTEMS. 6(5).
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Dynamics and microevolution of Vibrio parahaemolyticus populations in shellfish farms

Songzhe Fu, Qingyao Wang, Yixiang Zhang, Qian Yang (UGent) , Jingwei Hao, Ying Liu and Bo Pang

(2021) MSYSTEMS. 6(1).

Academic Bibliography

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Quantifying synthetic bacterial community composition with flow cytometry : efficacy in mock communities and challenges in co-cultures

Year-long, multiple-timepoint field studies show the importance of spatiotemporal dynamics and microbial functions in agricultural soil microbiomes

Differential recovery of chain-elongating bacteria : comparing droplet, plating, and dilution-to-extinction methods

Lack of abundant core virome in Culex mosquitoes from a temperate climate region despite a mosquito species-specific virome

Charting the lipopeptidome of nonpathogenic Pseudomonas

A high dose of dietary berberine improves gut wall morphology, despite an expansion of enterobacteriaceae and a reduction in beneficial microbiota in broiler chickens

Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveal taxonomic and functional diversity

Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting

Dynamics and microevolution of Vibrio parahaemolyticus populations in shellfish farms

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