Ghent University Academic Bibliography

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Adaptive multi-frequency oscillators model coordination recovery in musical quartets

Bavo Van Kerrebroeck (UGent) , Alex Demos, Marc Leman (UGent) , Marcelo Wanderley, Caroline Palmer and Pieter-Jan Maes (UGent)

(2026) PLOS COMPUTATIONAL BIOLOGY.
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- Journal Article
- open access
CARGO: A cytometry analysis framework via Regularized graph optimal-transport

Abida Sanjana Shemonti, Grzegorz B. Gmyrek, Katrien Quintelier (UGent) , Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Marcella Willemsen, Joachim G. J. V. Aerts, Eva V. E. Madsen, J. Paul Robinson, Alex Pothen, et al.

(2026) PLOS COMPUTATIONAL BIOLOGY. 22(6).
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- Journal Article
- A1
- open access
Hyperdimensional computing : a fast, robust, and interpretable paradigm for biological data

Michiel Stock (UGent) , Wim Van Criekinge (UGent) , Dimitri Boeckaerts, Steff Taelman (UGent) , Maxime Van Haeverbeke (UGent) , Pieter Dewulf and Bernard De Baets (UGent)

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(9).
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- Journal Article
- A1
Re-awakening the brain : forcing transitions in disorders of consciousness by external in silico perturbation

Paulina Clara Dagnino, Anira Escrichs, Ane López-González, Olivia Gosseries, Jitka Annen (UGent) , Yonatan Sanz Perl, Morten L. Kringelbach, Steven Laureys and Gustavo Deco

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(5).
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- Journal Article
- A1
- open access
DepoScope : accurate phage depolymerase annotation and domain delineation using large language models

Robby Concha-Eloko, Michiel Stock (UGent) , Bernard De Baets (UGent) , Yves Briers (UGent) , Rafael Sanjuán, Pilar Domingo-Calap and Dimitri Boeckaerts

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(8).
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- A1
- open access
Characterizing the dynamics, reactivity and controllability of moods in depression with a Kalman filter

Jolanda Malamud, Sinan Guloksuz, Ruud van Winkel, Philippe Delespaul, Marc A. F. De Hert, Catherine Derom (UGent) , Evert Thiery, Jacobs Nele, Bart P. F. Rutten and Quentin J. M. Huys

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(9).
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- Journal Article
- A1
- open access
Learning environment-specific learning rates

Jonas Simoens (UGent) , Tom Verguts (UGent) and Senne Braem (UGent)

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(3).
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- A1
- open access
The successor representation subserves hierarchical abstraction for goal-directed behavior

Sven Wientjes (UGent) and Clay Holroyd (UGent)

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(2).
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- A1
- open access
A low-dimensional approximation of optimal confidence

Pierre Le Denmat, Tom Verguts (UGent) and Kobe Desender

(2024) PLOS COMPUTATIONAL BIOLOGY. 20(7).
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- A1
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Mechanistic insight into the functional role of human sinoatrial node conduction pathways and pacemaker compartments heterogeneity : a computer model analysis

Jichao Zhao, Roshan Sharma, Anuradha Kalyanasundaram, James Kennelly, Jieyun Bai, Ning Li, Alexander Panfilov (UGent) and Vadim V. Fedorov

(2023) PLOS COMPUTATIONAL BIOLOGY. 19(12).

Academic Bibliography

Adaptive multi-frequency oscillators model coordination recovery in musical quartets

CARGO: A cytometry analysis framework via Regularized graph optimal-transport

Hyperdimensional computing : a fast, robust, and interpretable paradigm for biological data

Re-awakening the brain : forcing transitions in disorders of consciousness by external in silico perturbation

DepoScope : accurate phage depolymerase annotation and domain delineation using large language models

Characterizing the dynamics, reactivity and controllability of moods in depression with a Kalman filter

Learning environment-specific learning rates

The successor representation subserves hierarchical abstraction for goal-directed behavior

A low-dimensional approximation of optimal confidence

Mechanistic insight into the functional role of human sinoatrial node conduction pathways and pacemaker compartments heterogeneity : a computer model analysis

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