Ghent University Academic Bibliography

Journal Article
A1
open access

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(3).

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Journal Article
A1
open access

Filter-aided extracellular vesicle enrichment (FAEVEr) for proteomics

Jarne Pauwels (UGent) , Tessa Van de Steene (UGent) , Jana Van de Velde, Freya De Muyer (UGent) , Danaë De Pauw (UGent) , Femke Baeke (UGent) , Sven Eyckerman (UGent) and Kris Gevaert (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(2).

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Journal Article
A1
open access

Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

Adillah Gul (UGent) , Lecia L. Pewe, Patrick Willems (UGent) , Rupert Mayer (UGent) , Fabien Henri Thery (UGent) , Caroline Asselman (UGent) , Ilke Aernout (UGent) , Rein Verbeke (UGent) , Denzel Eggermont (UGent) , Laura Van Moortel (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(9).

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Journal Article
A1
open access

Selective modulation of the human glucocorticoid receptor compromises GR chromatin occupancy and recruitment of p300/CBP and the Mediator complex

Laura Van Moortel (UGent) , Annick Verhee (UGent) , Jonathan Thommis (UGent) , René Houtman, Diana Melchers, Louis Delhaye (UGent) , Chloé Van Leene (UGent) , Madeleine Hellemans (UGent) , Kris Gevaert (UGent) , Sven Eyckerman (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(3).

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Journal Article
A1
open access

msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

Nina Demeulemeester (UGent) , Marie Gébelin, Lucas Caldi Gomes, Paul Lingor, Christine Carapito, Lennart Martens (UGent) and Lieven Clement (UGent)

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(2).

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Journal Article
A1
open access

A targeted LC-MRM3 proteomic approach for the diagnosis of SARS-CoV-2 infection in nasopharyngeal swabs

Nicolas Drouin, Hyung L. Elfrink, Stefan A. Boers, Sam van Hugten, Els Wessels, Jutte J.C. de Vries, Geert H. Groeneveld, Paul Miggiels, Bart Van Puyvelde (UGent) , Maarten Dhaenens (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(7).

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Journal Article
A1
open access

A nitrogen-specific interactome analysis sheds light on the role of the SnRK1 and TOR kinases in plant nitrogen signaling

Freya Persyn (UGent) , Wouter Smagghe (UGent) , Dominique Eeckhout (UGent) , Toon Mertens (UGent) , Thomas Smorscek (UGent) , Nancy De Winne (UGent) , Geert Persiau (UGent) , Eveline Van De Slijke (UGent) , Nathalie Crepin (UGent) , Astrid Gadeyne (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(10).

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Journal Article
A1
open access

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

Annelies Bogaert, Daria Fijalkowska (UGent) , An Staes (UGent) , Tessa Van de Steene (UGent) , Hans Demol (UGent) and Kris Gevaert (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).

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Journal Article
A1
open access

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).

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Journal Article
A1
open access

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Sylwia Magdalena Struk (UGent) , Carolien De Cuyper, Anse Jacobs, Lukas Braem, Alan Walton (UGent) , Annick De Keyser (UGent) , Stephen Depuydt (UGent) , Lam Dai Vu (UGent) , Ive De Smet (UGent) , François-Didier Boyer, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.

Academic Bibliography

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Filter-aided extracellular vesicle enrichment (FAEVEr) for proteomics

Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

Selective modulation of the human glucocorticoid receptor compromises GR chromatin occupancy and recruitment of p300/CBP and the Mediator complex

msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

A targeted LC-MRM3 proteomic approach for the diagnosis of SARS-CoV-2 infection in nasopharyngeal swabs

A nitrogen-specific interactome analysis sheds light on the role of the SnRK1 and TOR kinases in plant nitrogen signaling

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

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