Ghent University Academic Bibliography

Journal Article
A1
open access

Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh plus /trh plus genotypes

Marieke Vandeputte (UGent) , Sieglinde Coppens, Peter Bossier (UGent) , Nick Vereecke and Daisy Vanrompay (UGent)

(2024) BMC GENOMICS. 25(1).

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Journal Article
A1
open access

Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers

Signe Bråtelund, Tom Ruttink (UGent) , Franz Goecke, Ole Jacob Broch, Gunnar Klemetsdal, Jørgen Ødegård and Åshild Ergon

(2024) BMC GENOMICS. 25(1).

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Journal Article
A1
open access

Investigating diversity and similarity between CBM13 modules and ricin-B lectin domains using sequence similarity networks

Tibo De Coninck (UGent) , Garry P. Gippert, Bernard Henrissat, Tom Desmet (UGent) and Els Van Damme (UGent)

(2024) BMC GENOMICS. 25(1).

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Journal Article

The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation

Tiffany A. Kosch, Maria Torres-Sanchez, H. Christoph Liedtke, Kyle Summers, Maximina H. Yun, Andrew J. Crawford, Simon T. Maddock, Md. Sabbir Ahammed, Victor L. N. Araujo, Lorenzo V. Bertola, et al.

(2024) BMC GENOMICS. 25(1).

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Journal Article
A1
open access

SUsPECT : a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation

Renee Salz, Nuno Saraiva-Agostinho, Emil Vorsteveld, Caspar I. van der Made, Simone Kersten, Merel Stemerdink, Jamie Allen, Pieter-Jan Volders (UGent) , Sarah E. Hunt, Alexander Hoischen, et al.

(2023) BMC GENOMICS. 24(1).

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Journal Article
A1
open access

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys (UGent) , Peter Merseburger (UGent) , Jasper Staut (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2023) BMC GENOMICS. 24.

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Journal Article
A1
open access

Chromosome-scale assembly and annotation of the perennial ryegrass genome

Istvan Nagy, Elisabeth Veeckman, Chang Liu (UGent) , Michiel Van Bel (UGent) , Klaas Vandepoele (UGent) , Christian Sig Jensen, Tom Ruttink (UGent) and Torben Asp

(2022) BMC GENOMICS. 23(1).

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Journal Article
A1
open access

Exploring the transportome of the biosurfactant producing yeast Starmerella bombicola

Silke Claus, Sylwia Jezierska, Liam D. H. Elbourne and Inge Van Bogaert (UGent)

(2022) BMC GENOMICS. 23(1).

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Journal Article
A1
open access

'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).

Simone Maestri, Giorgio Gambino, Giulia Lopatriello, Andrea Minio, Irene Perrone, Emanuela Cosentino, Barbara Giovannone, Luca Marcolungo, Massimiliano Alfano, Stephane Rombauts (UGent) , et al.

(2022) BMC GENOMICS. 23(1).

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Journal Article
A1
open access

UMGAP : the Unipept MetaGenomics analysis pipeline

Felix Van der Jeugt, Rien Maertens (UGent) , Aranka Steyaert (UGent) , Pieter Verschaffelt (UGent) , Caroline De Tender (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BMC GENOMICS. 23(1).

Academic Bibliography

Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh plus /trh plus genotypes

Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers

Investigating diversity and similarity between CBM13 modules and ricin-B lectin domains using sequence similarity networks

The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation

SUsPECT : a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Chromosome-scale assembly and annotation of the perennial ryegrass genome

Exploring the transportome of the biosurfactant producing yeast Starmerella bombicola

'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).

UMGAP : the Unipept MetaGenomics analysis pipeline

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