Ghent University Academic Bibliography

Journal Article
A1
open access

ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage, Tony Burdett, Bert Droesbeke (UGent) , Karoly Erdos, Rolando Fernandez, Alasdair Gray, Muhammad Haseeb, Simon Jupp, Flavia Penim, Cyril Pommier, et al.

(2022) BIOINFORMATICS. 38(11). p.3141-3142

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OMEN : network-based driver gene identification using mutual exclusivity

Dries Van Daele, Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2022) BIOINFORMATICS. 38(12). p.3245-3251

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Journal Article
A1
open access

Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

Cecilia Sensalari (UGent) , Steven Maere (UGent) and Rolf Lohaus (UGent)

(2022) BIOINFORMATICS. 38(2). p.530-532

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Journal Article
A1
open access

CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603

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BioCCP.jl : collecting coupons in combinatorial biotechnology

Kirsten Van Huffel, Michiel Stock (UGent) and Bernard De Baets (UGent)

(2022) BIOINFORMATICS. 38(4). p.1144-1145

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Journal Article
A1
open access

Unipept visualizations : an interactive visualization library for biological data

Pieter Verschaffelt (UGent) , James Collier (UGent) , Alexander Botzki (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BIOINFORMATICS. 38(2). p.562-563

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Journal Article
A1
open access

Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

Michiel Van Bel (UGent) and Klaas Vandepoele (UGent)

(2021) BIOINFORMATICS. 36(22-23). p.5558-5560

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Journal Article
A1
open access

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

Miguel Roncoroni (UGent) , Bert Droesbeke (UGent) , Ignacio Eguinoa (UGent) , Kim De Ruyck (UGent) , Flora D'Anna (UGent) , Dilmurat Yusuf, Björn Grüning, Rolf Backofen and Frederik Coppens (UGent)

(2021) BIOINFORMATICS. 37(21). p.3983-3985

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Journal Article
A1
open access

PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov, Ilse Cleenwerck (UGent) , Mohamed Mysara, Natalie Leys, Pieter Monsieurs, Guillaume Tahon (UGent) , Aurélien Carlier (UGent) , Peter Vandamme (UGent) and Rob Van Houdt

(2020) BIOINFORMATICS. 36(8). p.2337-2344

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PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

Xue Qing, Meng Wang, Gerrit Karssen (UGent) , Patricia Bucki, Wim Bert (UGent) and Sigal Braun-Miyara

(2020) BIOINFORMATICS. 36(4). p.1052-1056

Academic Bibliography

ELIXIR biovalidator for semantic validation of life science metadata

OMEN : network-based driver gene identification using mutual exclusivity

Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

CpG transformer for imputation of single-cell methylomes

BioCCP.jl : collecting coupons in combinatorial biotechnology

Unipept visualizations : an interactive visualization library for biological data

Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

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