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- 2018
- AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality
- Computational deconvolution of transcriptomics data from mixed cell populations
- Gearing up to handle the mosaic nature of life in the quest for orthologs
- 2017
- AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality
- OMSim : a simulator for optical map data
- sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets
- MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform
- A Cytoscape app for motif enumeration with ISMAGS
- PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
- 2016
- Simultaneous discovery of cancer subtypes and subtype features by molecular data integration