Ghent University Academic Bibliography

Mark

DoRes within CellMissy : dose-response analysis on cell migration and related data

Gwendolien Sergeant (UGent) , Lennart Martens (UGent) , Marleen Van Troys (UGent) and Paola Masuzzo (UGent)

(2019) BIOINFORMATICS.

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wgd : simple command line tools for the analysis of ancient whole genome duplications

Arthur Zwaenepoel (UGent) and Yves Van de Peer (UGent)

(2019) BIOINFORMATICS.

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SpliceRover : interpretable convolutional neural networks for improved splice site prediction

Jasper Zuallaert (UGent) , Fréderic Godin (UGent) , Mi Jung Kim (UGent) , Arne Soete (UGent) , Yvan Saeys (UGent) and Wesley De Neve (UGent)

(2018) BIOINFORMATICS. 34(24). p.4180-4188

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AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2018) BIOINFORMATICS. 34(3). p.425-433

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journalArticle
A1
open access

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

Ine Melckenbeeck (UGent) , Pieter Audenaert (UGent) , Didier Colle (UGent) and Mario Pickavet (UGent)

(2018) BIOINFORMATICS. 34(8). p.1372-1380

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Computational deconvolution of transcriptomics data from mixed cell populations

Francisco Avila Cobos (UGent) , Jo Vandesompele (UGent) , Pieter Mestdagh (UGent) and Katleen De Preter (UGent)

(2018) BIOINFORMATICS. 34(11). p.1969-1979

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journalArticle
A1
open access

Gearing up to handle the mosaic nature of life in the quest for orthologs

Kristoffer Forslund, Cecile Pereira, Salvador Capella-Gutierrez, Alan Sousa da Silva, Adrian Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele (UGent) , Ingo Ebersberger, et al.

(2018) BIOINFORMATICS. 34(2). p.323-329

Mark

journalArticle
A1
open access

OMSim : a simulator for optical map data

Giles Miclotte (UGent) , Stéphane Plaisance (UGent) , Stephane Rombauts (UGent) , Yves Van de Peer (UGent) , Pieter Audenaert (UGent) and Jan Fostier (UGent)

(2017) BIOINFORMATICS. 33(17). p.2740-2742

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AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2017) BIOINFORMATICS. 33(10). p.1464-1472

Mark

sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

Kevin Titeca (UGent) , Pieter Meysman, Kris Laukens, Lennart Martens (UGent) , Jan Tavernier (UGent) and Sven Eyckerman (UGent)

(2017) BIOINFORMATICS. 33(12). p.1902-1904

Academic Bibliography

DoRes within CellMissy : dose-response analysis on cell migration and related data

wgd : simple command line tools for the analysis of ancient whole genome duplications

SpliceRover : interpretable convolutional neural networks for improved splice site prediction

AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

Computational deconvolution of transcriptomics data from mixed cell populations

Gearing up to handle the mosaic nature of life in the quest for orthologs

OMSim : a simulator for optical map data

AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

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