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- 2017
- sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets
- MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform
- AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality
- A Cytoscape app for motif enumeration with ISMAGS
- 2016
- Simultaneous discovery of cancer subtypes and subtype features by molecular data integration
- BiDiFuse : a FIJI plugin for fusing bi-directionally recorded microscopic image volumes
- Cell line name recognition in support of the identification of synthetic lethality in cancer from text
- Unipept web services for metaproteomics analysis
- 2015
- EVpedia: a community web portal for extracellular vesicles research
- VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering