Ghent University Academic Bibliography

Your filters: cql: issn exact "1367-4803"

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ELLIPSIS : robust quantification of splicing in scRNA-seq

Marie Van Hecke (UGent) , Niko Beerenwinkel, Thibault Lootens (UGent) , Jan Fostier (UGent) , Robrecht Raedt (UGent) and Kathleen Marchal (UGent)

(2025) BIOINFORMATICS. 41(2).
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BioArchLinux : community-driven fresh reproducible software repository for life sciences

Guoyi Zhang, Pekka Ristola, Han Su, Bipin Kumar, Boyu Zhang, Yujin Hu, Michael G. Elliot, Viktor Drobot, Jie Zhu, Jens Staal (UGent) , et al.

(2025) BIOINFORMATICS. 41(3).
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SPAED : harnessing AlphaFold output for accurate segmentation of phage endolysin domains

Alexandre Boulay (UGent) , Emma Cremelie (UGent) , Clovis Galiez, Yves Briers (UGent) , Elsa Rousseau and Roberto Vázquez (UGent)

(2025) BIOINFORMATICS. 41(10).
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doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).
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Columba: fast approximate pattern matching with optimized search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Travis Gagie and Jan Fostier (UGent)

(2025) BIOINFORMATICS. 41(12).
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Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems (UGent) , Lara De Deyn, Lena Duchateau, Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , et al.

(2024) BIOINFORMATICS. 40(9).
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Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

Artuur Couckuyt, Benjamin Rombaut (UGent) , Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2024) BIOINFORMATICS. 40(4).
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GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

Uxia Veleiro, Jesus de la Fuente, Guillermo Serrano, Marija Pizurica (UGent) , Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert and Mikel Hernaez

(2024) BIOINFORMATICS. 40(1).
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wgd v2 : a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Hengchi Chen (UGent) , Arthur Zwaenepoel and Yves Van de Peer (UGent)

(2024) BIOINFORMATICS. 40(5).
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ECCB2024 : the 23rd European Conference on Computational Biology

Anu Kukkonen-Macchi, Sampsa Hautaniemi, Katharina F Heil, Merja Heinäniemi, Lars Juhl Jensen, Sini Junttila, Lukas Käll, Asta Laiho, Peter Maccallum, Matti Nykter, et al.

(2024) BIOINFORMATICS. 40(Supplement 2). p.ii1-ii3

Academic Bibliography

ELLIPSIS : robust quantification of splicing in scRNA-seq

BioArchLinux : community-driven fresh reproducible software repository for life sciences

SPAED : harnessing AlphaFold output for accurate segmentation of phage endolysin domains

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Columba: fast approximate pattern matching with optimized search schemes

Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

wgd v2 : a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

ECCB2024 : the 23rd European Conference on Computational Biology

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