Ghent University Academic Bibliography

Journal Article
A1
open access

BioSamples database : the global hub for sample metadata and multi-omics integration

Dipayan Gupta, Isuru Liyanage, Yasset Perez-Riverol, Enrique Sapena Ventura, Wei Kheng Teh, Tim Van Den Bossche (UGent) , Senthilnathan Vijayaraja, Amnon Khen, Ugis Sarkans, Tony Burdett, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D1761-D1767

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Journal Article
A1
open access

JASPAR 2026 : expansion of transcription factor binding profiles and integration of deep learning models

Damla Ovek Baydar, Ieva Rauluseviciute, Dina R Aronsen, Romain Blanc-Mathieu, Ine Bonthuis, Herman De Beukelaer (UGent) , Katalin Ferenc, Alice Jegou, Vipin Kumar, Roza Berhanu Lemma, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D184-D193

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Journal Article
A1
open access

DNA binding and dimerization of the SOG1 NAC domain are functionally linked with its ability to undergo liquid–liquid phase separation

Kim Mignon, Rani Van der Eecken, Margot Galle (UGent) , Manon Demulder, Joris Van Lindt, Lieven De Veylder (UGent) , Henri De Greve and Remy Loris

(2026) NUCLEIC ACIDS RESEARCH. 54(2).

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Journal Article
A1
open access

TRAINSPOTTER : profiling nascent protein N-termini indicative of bacterial translation initiation via deformylation-assisted N-terminomics

Petra Van Damme (UGent)

(2026) NUCLEIC ACIDS RESEARCH. 54(11).

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A1
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SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang Zhang, Hong-Yun Shang, Richard Ian Milne, Fabricio De Almeida Silva (UGent) , Hengchi Chen (UGent) , Min-Jie Zhou, Heng Shu, Kai-Hua Jia, Yves Van de Peer (UGent) and Yong-Peng Ma

(2025) NUCLEIC ACIDS RESEARCH. 53(7).

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Journal Article
A1
open access

CORESH : a gene signature-based search engine for public gene expression datasets

Vladimir Sukhov, Aigul Nugmanova, Yury Vorontsov, Parul Mehrotra, Maksim Kleverov, Kodi Ravichandran (UGent) , Maxim Artyomov and Alexey Sergushichev

(2025) NUCLEIC ACIDS RESEARCH. 53(W1). p.W187-W192

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Journal Article
A1
open access

KlebPhaCol : a community-driven resource for Klebsiella research identified a novel phage family

Daniela Rothschild-Rodriguez, Kai S Lambon, Simran Krishnakant Kushwaha, Sofya K Garushyants, Moritz Ertelt, Agnieszka Łątka (UGent) , Ana Rita Costa, Anna Mantzouratou, Claire King, Dimitri Boeckaerts, et al.

(2025) NUCLEIC ACIDS RESEARCH. 53(21).

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Journal Article
A1
open access

Simultaneous determination of cytosolic aminoacyl-tRNA synthetase activities by LC-MS/MS

Marisa Mendes, Nicole Wolf, Joelle Rudinger-Thirion, Dominic Lenz, Magali Frugier, PATRICK VERLOO (UGent) , Hanna Mandel, Joshua Manor, Rachel Kassel, Willemijn E. Corpeleijn, et al.

(2024) NUCLEIC ACIDS RESEARCH. 52(22).

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Journal Article
A1
open access

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

Dipesh Kumar Singh, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene (UGent) , Geert De Jaeger (UGent) , Imran Siddiqi, Raphael Guerois, Wayne Crismani and Raphael Mercier

(2023) NUCLEIC ACIDS RESEARCH. 51(6). p.2516-2528

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Journal Article
A1
open access

HIV-PULSE : a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization

Laurens Lambrechts, Noah Bonine (UGent) , Rita Verstraeten (UGent) , Marion Pardons (UGent) , Ytse Noppe (UGent) , Sofie Rutsaert (UGent) , Filip Van Nieuwerburgh (UGent) , Wim Van Criekinge (UGent) , Basiel Cole and Linos Vandekerckhove (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(20). p.e102-e102

Academic Bibliography

BioSamples database : the global hub for sample metadata and multi-omics integration

JASPAR 2026 : expansion of transcription factor binding profiles and integration of deep learning models

DNA binding and dimerization of the SOG1 NAC domain are functionally linked with its ability to undergo liquid–liquid phase separation

TRAINSPOTTER : profiling nascent protein N-termini indicative of bacterial translation initiation via deformylation-assisted N-terminomics

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

CORESH : a gene signature-based search engine for public gene expression datasets

KlebPhaCol : a community-driven resource for Klebsiella research identified a novel phage family

Simultaneous determination of cytosolic aminoacyl-tRNA synthetase activities by LC-MS/MS

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

HIV-PULSE : a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization

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