Ghent University Academic Bibliography

Journal Article
open access

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

Dipesh Kumar Singh, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene (UGent) , Geert De Jaeger (UGent) , Imran Siddiqi, Raphael Guerois, Wayne Crismani and Raphael Mercier

(2023) Nucleic Acids Research. 51(6). p.2516-2528

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Journal Article
open access

SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Ward Develtere (UGent) , Evelien Waegneer, Kevin Debray (UGent) , Jonas De Saeger (UGent) , Sabine Van Glabeke, Steven Maere (UGent) , Tom Ruttink (UGent) and Thomas B. Jacobs (UGent)

(2023) Nucleic Acids Research.

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Journal Article
A1
open access

A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

Enrico Cadoni (UGent) , Lessandro De Paepe (UGent) , Gertjan Colpaert (UGent) , Ruben Tack (UGent) , Dries Waegeman, Alex Manicardi (UGent) and Annemieke Madder (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(9). p.4112-4125

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Journal Article
A1
open access

The quest for orthologs Orthology Benchmark Service in 2022

Yannis Nevers, Tamsin E M Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codo, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(W1). p.W623-W632

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Journal Article
A1
open access

PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants

Michiel Van Bel, Francesca Silvestri (UGent) , Eric M Weitz, Lukasz Kreft, Alexander Botzki (UGent) , Frederik Coppens (UGent) and Klaas Vandepoele (UGent)

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D1468-D1474

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Journal Article
A1
open access

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez (UGent) , et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D165-D173

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Journal Article
A1
open access

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

Heleen Masset, Jia Ding, Eftychia Dimitriadou, Sophie Debrock, Olga Tsuiko, Katrien Smits (UGent) , Karen Peeraer, Thierry Voet, Masoud Zamani Esteki and Joris R. Vermeesch

(2022) NUCLEIC ACIDS RESEARCH. 50(11).

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Journal Article
A1
open access

b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59

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Journal Article
A1
open access

Single cell epigenetic visualization assay

Sam Kint, Wim Van Criekinge (UGent) , Linos Vandekerckhove (UGent) , Winnok H De Vos, Karol Bomsztyk, Diane S Krause and Oleg Denisenko

(2021) NUCLEIC ACIDS RESEARCH. 49(8).

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Journal Article
A1
open access

A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

Junha Shin, Harald Marx, Alicia Richards, Dries Vaneechoutte, Dhileepkumar Jayaraman, Junko Maeda, Sanhita Chakraborty, Michael Sussman, Klaas Vandepoele (UGent) , Jean-Michel Ané, et al.

(2021) NUCLEIC ACIDS RESEARCH. 49(1).

Academic Bibliography

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

The quest for orthologs Orthology Benchmark Service in 2022

PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

b2bTools : online predictions for protein biophysical features and their conservation

Single cell epigenetic visualization assay

A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

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