Ghent University Academic Bibliography

Journal Article
A1
open access

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang Zhang, Hong-Yun Shang, Richard Ian Milne, Fabricio De Almeida Silva (UGent) , Hengchi Chen (UGent) , Min-Jie Zhou, Heng Shu, Kai-Hua Jia, Yves Van de Peer (UGent) and Yong-Peng Ma

(2025) NUCLEIC ACIDS RESEARCH. 53(7).

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Journal Article

Simultaneous determination of cytosolic aminoacyl-tRNA synthetase activities by LC-MS/MS

Marisa Mendes, Nicole Wolf, Joelle Rudinger-Thirion, Dominic Lenz, Magali Frugier, PATRICK VERLOO (UGent) , Hanna Mandel, Joshua Manor, Rachel Kassel, Willemijn E. Corpeleijn, et al.

(2024) NUCLEIC ACIDS RESEARCH. 52(22).

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Journal Article
A1
open access

Mousepost 2.0, a major expansion of the resource

Steven Timmermans (UGent) , Jolien Vandewalle (UGent) and Claude Libert (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(4). p.1652-1661

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Journal Article
A1
open access

A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

Enrico Cadoni (UGent) , Lessandro De Paepe (UGent) , Gertjan Colpaert (UGent) , Ruben Tack (UGent) , Dries Waegeman, Alex Manicardi (UGent) and Annemieke Madder (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(9). p.4112-4125

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A1
open access

SMAP design : a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Ward Develtere (UGent) , Evelien Waegneer, Kevin Debray (UGent) , Jonas De Saeger (UGent) , Sabine Van Glabeke, Steven Maere (UGent) , Tom Ruttink (UGent) and Thomas B. Jacobs (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(7).

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Journal Article
A1
open access

Updated MS²PIP web server supports cutting-edge proteomics applications

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Cristina Chiva, Eduard Sabido, Aurelie Hirschler, Christine Carapito, Lennart Martens (UGent) , Sven Degroeve (UGent) and Ralf Gabriels (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(W1). p.W338-W342

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Journal Article
A1
open access

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

Dipesh Kumar Singh, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene (UGent) , Geert De Jaeger (UGent) , Imran Siddiqi, Raphael Guerois, Wayne Crismani and Raphael Mercier

(2023) NUCLEIC ACIDS RESEARCH. 51(6). p.2516-2528

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Journal Article
A1
open access

HIV-PULSE : a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization

Laurens Lambrechts (UGent) , Noah Bonine (UGent) , Rita Verstraeten (UGent) , Marion Pardons (UGent) , Ytse Noppe (UGent) , Sofie Rutsaert (UGent) , Filip Van Nieuwerburgh (UGent) , Wim Van Criekinge (UGent) , Basiel Cole and Linos Vandekerckhove (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(20). p.e102-e102

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JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez (UGent) , et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D165-D173

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A1
open access

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

Heleen Masset, Jia Ding, Eftychia Dimitriadou, Sophie Debrock, Olga Tsuiko, Katrien Smits (UGent) , Karen Peeraer, Thierry Voet, Masoud Zamani Esteki and Joris R. Vermeesch

(2022) NUCLEIC ACIDS RESEARCH. 50(11).

Academic Bibliography

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Simultaneous determination of cytosolic aminoacyl-tRNA synthetase activities by LC-MS/MS

Mousepost 2.0, a major expansion of the resource

A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

SMAP design : a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Updated MS²PIP web server supports cutting-edge proteomics applications

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

HIV-PULSE : a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

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