Ghent University Academic Bibliography

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Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas Prost (UGent) , Quinten Bafort (UGent) , Antoine Van de Vloet (UGent) , Fabricio De Almeida Silva (UGent) , Yunn Thet Paing (UGent) , Griet Casteleyn (UGent) , Sofie D'hondt (UGent) , Olivier De Clerck (UGent) and Yves Van de Peer (UGent)

(2025) NEW PHYTOLOGIST. 245(22). p.869-884
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doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).
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Deciphering the biosynthetic pathway of triterpene saponins in Prunella vulgaris

Si‐Jie Liu, Zhengtai Liu, Bing‐Yan Shao, Tao Li, Xinning Zhu, Ren Wang, Lei Shi, Sheng Xu, Yves Van de Peer (UGent) and Jia‐Yu Xue

(2025) PLANT JOURNAL. 121(2).
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Novel adaptive immune systems in pristine Antarctic soils

Marc W. Van Goethem, Oliver K. I. Bezuidt, Rian Pierneef, Surendra Vikram, David W. Hopkins, Thomas Aspray, Grant Hall, Stephan Woodborne, Ian D. Hogg, Trent R. Northen, et al.

(2025) SCIENTIFIC REPORTS. 15(1).
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Flavonoids and anthocyanins in seagrasses : implications for climate change adaptation and resilience

Jana Botes, Xiao Ma (UGent) , Jiyang Chang (UGent) , Yves Van de Peer (UGent) and Dave Kenneth Berger

(2025) FRONTIERS IN PLANT SCIENCE. 15.
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Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls

Zahin Ali, Qiao Wen Tan, Peng Ken Lim, Hengchi Chen (UGent) , Lukas Pfeifer, Irene Julca, Jia Min Lee, Birgit Classen, Sophie de Vries, Jan de Vries, et al.

(2025) NATURE PLANTS.
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Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii

Antoine Van de Vloet (UGent) , Lucas Prost Boxoen (UGent) , Quinten Bafort (UGent) , Yunn Thet Paing (UGent) , Griet Casteleyn (UGent) , Lucile Jomat, Stéphane D. Lemaire, Olivier De Clerck (UGent) and Yves Van de Peer (UGent)

(2025) NEW PHYTOLOGIST. 246(3). p.1403-1412
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Water lily pond : a multiomics database for water lilies

Chengjun Zhao, Ji Zhang, Yayu Chen, Lishuang Yang, Hongliang Chen, Yufan Liang, Wenquan Wang, Shuang He, Yunqing Luo, Junyu Zhang, et al.

(2025) HORTICULTURE RESEARCH. 12(6).
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SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang Zhang, Hong-Yun Shang, Richard Ian Milne, Fabricio De Almeida Silva (UGent) , Hengchi Chen (UGent) , Min-Jie Zhou, Heng Shu, Kai-Hua Jia, Yves Van de Peer (UGent) and Yong-Peng Ma

(2025) NUCLEIC ACIDS RESEARCH. 53(7).
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Untangling the gordian knot : the intertwining interactions between developmental hormone signaling and epigenetic mechanisms in insects

Bart Geens, Stijn Goossens, Jia Li (UGent) , Yves Van de Peer (UGent) and Jozef Vanden Broeck

(2024) MOLECULAR AND CELLULAR ENDOCRINOLOGY. 585.

Academic Bibliography

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Deciphering the biosynthetic pathway of triterpene saponins in Prunella vulgaris

Novel adaptive immune systems in pristine Antarctic soils

Flavonoids and anthocyanins in seagrasses : implications for climate change adaptation and resilience

Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls

Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii

Water lily pond : a multiomics database for water lilies

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Untangling the gordian knot : the intertwining interactions between developmental hormone signaling and epigenetic mechanisms in insects

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