Ghent University Academic Bibliography

Journal Article
A1
open access

The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

Mohamed Fares, Engy K. Tharwat, Ilse Cleenwerck (UGent) , Pieter Monsieurs, Rob Van Houdt, Peter Vandamme (UGent) , Mohamed El-Hadidi and Mohamed Mysara

(2025) ENVIRONMENTAL MICROBIOME. 20(1).

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Conference Paper

StrainInSight: a Unique Private Strain Collection and Innovative Tools to Facilitate Novel Strain Discovery.

Eliza Depoorter (UGent) , Anneleen Wieme (UGent) , Charlotte Peeters (UGent) , Ilse Cleenwerck (UGent) , Ann Hellemans (UGent) and Peter Vandamme (UGent)

(2024)

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Conference Paper

Accurate Strain Identification and Characterization are Essential for an Optimal Valorization Trajectory.

Anneleen Wieme (UGent) , Eliza Depoorter (UGent) , Ilse Cleenwerck (UGent) , Charlotte Peeters (UGent) , Ann Hellemans (UGent) and Peter Vandamme (UGent)

(2024)

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Conference Paper

StrainInSight: a unique private strain collection and innovative tools for novel strain discovery.

Charlotte Peeters (UGent) , Anneleen Wieme (UGent) , Maaike Perneel (UGent) , Eliza Depoorter (UGent) , Ilse Cleenwerck (UGent) , Ann Hellemans (UGent) and Peter Vandamme (UGent)

(2024)

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Journal Article
A1
open access

Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

Gleb Goussarov, Mohamed Mysara, Ilse Cleenwerck (UGent) , Jürgen Claesen, Natalie Leys, Peter Vandamme (UGent) and Rob Van Houdt

(2024) MICROBIOLOGY. 170(6).

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A comparative genomic analysis of Fructobacillus evanidus sp. nov. from bumble bees

Juliana Botero Cardona (UGent) , Charlotte Peeters (UGent) , Evelien De Canck (UGent) , David Laureys (UGent) , Anneleen Wieme (UGent) , Ilse Cleenwerck (UGent) , Eliza Depoorter (UGent) , Jessy Praet (UGent) , Denis Michez, Guy Smagghe (UGent) , et al.

(2024) SYSTEMATIC AND APPLIED MICROBIOLOGY. 47(2-3).

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Journal Article
A1
open access

The GEN-ERA toolbox : unified and reproducible workflows for research in microbial genomics

Luc Cornet, Benoit Durieu, Frederik Baert, Elizabet D'hooge, David Colignon, Loic Meunier, Valérian Lupo, Ilse Cleenwerck (UGent) , Heide-Marie Daniel, Leen Rigouts, et al.

(2023) GIGASCIENCE. 12. p.1-10

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Journal Article
A2
open access

Genome sequences of the two Telluria type strains, Telluria chitinolytica ACM 3522T and Telluria mixta DSM 29330T

Andri Frediansyah, Henrike Miess, Ilse Cleenwerck (UGent) and Harald Gross

(2023) MICROBIOLOGY RESOURCE ANNOUNCEMENTS. 12(7).

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Journal Article
A1
open access

Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages

Atena Sadat Sombolestani (UGent) , Dries Bongaerts (UGent) , Eliza Depoorter (UGent) , Ilse Cleenwerck (UGent) , Anneleen Wieme (UGent) , Scott J. Britton, Stefan Weckx, Luc De Vuyst and Peter Vandamme (UGent)

(2023) SYSTEMATIC AND APPLIED MICROBIOLOGY. 46(5).

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Conference Paper

The importance of risk assessment for the use of microorganisms in the food and feed chains

Ilse Cleenwerck (UGent) , Anneleen Wieme (UGent) , Ann Hellemans (UGent) and Peter Vandamme (UGent)

(2023)

Academic Bibliography

The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

StrainInSight: a Unique Private Strain Collection and Innovative Tools to Facilitate Novel Strain Discovery.

Accurate Strain Identification and Characterization are Essential for an Optimal Valorization Trajectory.

StrainInSight: a unique private strain collection and innovative tools for novel strain discovery.

Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

A comparative genomic analysis of Fructobacillus evanidus sp. nov. from bumble bees

The GEN-ERA toolbox : unified and reproducible workflows for research in microbial genomics

Genome sequences of the two Telluria type strains, Telluria chitinolytica ACM 3522T and Telluria mixta DSM 29330T

Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages

The importance of risk assessment for the use of microorganisms in the food and feed chains

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