Ghent University Academic Bibliography

Bridging the diversity between 16S rRNA amplicon sequencing and cultivation studies

Michiel Van de Vliet (UGent) , Charlotte Peeters (UGent) , Margo Cnockaert (UGent) , Lisa Joos (UGent) , Marie Joossens (UGent) and Peter Vandamme (UGent)

(2025) BSM Annual Symposium 2025, Abstracts. p.139-139

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Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2025) COMPUTERS IN BIOLOGY AND MEDICINE. 186.

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Judicial Opinion 131

David R. Arahal, Carolee T. Bull, Henrik Christensen, Christopher Dunlap, Maria del Carmen Montero- Calasanz, Charles T. Parker, Peter Vandamme (UGent) , Antonio Ventosa, Stefano Ventura, Peter Young, et al.

(2025) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 75(2).

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The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

Mohamed Fares, Engy K. Tharwat, Ilse Cleenwerck (UGent) , Pieter Monsieurs, Rob Van Houdt, Peter Vandamme (UGent) , Mohamed El-Hadidi and Mohamed Mysara

(2025) ENVIRONMENTAL MICROBIOME. 20(1).

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Imbroritus primus gen. nov., sp. nov., a facultatively autotrophic bacterium from environmental water samples

Charlotte Peeters, Stéphanie Steyaert, Matan Shelomi, Anneleen Wieme (UGent) , Eliza Depoorter (UGent) , Evelien De Canck (UGent) , Kurt Houf (UGent) and Peter Vandamme (UGent)

(2025) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 75(5).

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Identification and functional genomic analyses of Bartonella isolates from honey bees, and reassessment of the taxonomy of the genus Bartonella

Juliana Botero Cardona (UGent) , Nikolas Basler, Margo Cnockaert (UGent) , Charlotte Peeters (UGent) , Maria Schreiber, Manja Marz, Dirk de Graaf (UGent) , Jelle Matthijnssens and Peter Vandamme (UGent)

(2025) SYSTEMATIC AND APPLIED MICROBIOLOGY. 48(4).

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Unravelling Listeria monocytogenes persistence in frozen potato processing : insights from whole genome sequencing analysis

Tessa Tuytschaever (UGent) , Marieke Mispelaere, Charlotte Peeters (UGent) , Evelien De Canck (UGent) , Peter Vandamme (UGent) , Katleen Raes (UGent) , Paco Hulpiau (UGent) and Imca Sampers (UGent)

(2025) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 441.

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Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Stephanie Steyaert (UGent) , Charlotte Peeters (UGent) , Anneleen Wieme (UGent) , Astrid Muyldermans, Kristof Vandoorslaer, Theodore Spilker, Ingrid Wybo, Denis Piérard, John J. LiPuma and Peter Vandamme (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(6).

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Volatile organic compounds associated with spoilage bacteria isolated from blue mussels (Mytilus edulis) packed under modified atmospheres

Susana Endah Ratnawati (UGent) , Lotta Kuuliala (UGent) , Margo Cnockaert (UGent) , Peter Vandamme (UGent) , Christophe Walgraeve (UGent) , Kristof Demeestere (UGent) and Frank Devlieghere (UGent)

(2024) 11th Shelf Life International Meeting (SLIM 2024), Abstracts.

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Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production

Inés Pradal, Víctor González-Alonso, Yohanes Raditya Wardhana, Margo Cnockaert (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Luc De Vuyst

(2024) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 411.

Academic Bibliography

Bridging the diversity between 16S rRNA amplicon sequencing and cultivation studies

Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Judicial Opinion 131

The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

Imbroritus primus gen. nov., sp. nov., a facultatively autotrophic bacterium from environmental water samples

Identification and functional genomic analyses of Bartonella isolates from honey bees, and reassessment of the taxonomy of the genus Bartonella

Unravelling Listeria monocytogenes persistence in frozen potato processing : insights from whole genome sequencing analysis

Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Volatile organic compounds associated with spoilage bacteria isolated from blue mussels (Mytilus edulis) packed under modified atmospheres

Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production

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