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- 2010
- Module network inference from a cancer gene expression data set identifies microRNA regulated modules
- Characterizing regulatory path motifs in integrated networks using perturbational data
- 2009
- Module networks revisited: computational assessment and prioritization of model predictions
- Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development
- Computational analysis of regulatory networks using genome-scale data
- Reverse-engineering transcriptional modules from gene expression data
- Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
- 2008
- Analysis of a Gibbs sampler method for model-based clustering of gene expression data
- 2007
- Validating module network learning algorithms using simulated data