Ghent University Academic Bibliography

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Your filters: cql: author exact 352760E4-F0EE-11E1-A9DE-61C894A0A6B4

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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Johannes Berbers (UGent) , Kevin Vanneste, Nancy H. C. J. Roosens, Kathleen Marchal (UGent) , Pieter-Jan Ceyssens and Sigrid C. J. De Keersmaecker

(2023) MICROBIAL GENOMICS. 9(1).
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Halvade somatic : somatic variant calling with Apache Spark

Dries Decap (UGent) , Louise de Schaetzen van Brienen (UGent) , Maarten Larmuseau (UGent) , Pascal Costanza, Charlotte Herzeel, Roel Wuyts, Kathleen Marchal (UGent) and Jan Fostier (UGent)

(2022) GIGASCIENCE. 11.
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Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study

Florence Buytaers (UGent) , Bavo Verhaegen (UGent) , Mathieu Gand, Jolien D'aes, Kevin Vanneste (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sarah Denayer and Sigrid C. J. De Keersmaecker

(2022) FOODS. 11(21).
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Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence

Yue Zhang, Xingyu Yang, Yves Van de Peer (UGent) , Jinming Chen, Kathleen Marchal (UGent) and Tao Shi

(2022) PLANT JOURNAL. 112(3). p.830-846
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- Miscellaneous
- open access
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys (UGent) , Jasper Staut (UGent) , Peter Merseburger (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2022)
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BLSSpeller to discover novel regulatory motifs in maize

Razgar Seyed Rahmani (UGent) , Dries Decap (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2022) DNA RESEARCH. 29(4).
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- A2
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Extracting functional insights from loss-of-function screens using deep link prediction

Pieter-Paul Strybol (UGent) , Maarten Larmuseau (UGent) , Louise de Schaetzen van Brienen (UGent) , Tim Van den Bulcke and Kathleen Marchal (UGent)

(2022) CELL REPORTS METHODS. 2(2).
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Antibiotic cycling affects resistance evolution independently of collateral sensitivity

Pauline Brepoels, Kenny Appermans, Camilo Andrés Pérez Romero, Bram Lories, Kathleen Marchal (UGent) and Hans P. Steenackers

(2022) MOLECULAR BIOLOGY AND EVOLUTION. 39(12).
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Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress

Taher Mohasseli, Razgar Seyed Rahmani (UGent) , Reza Darvishzadeh, Sara Dezhsetan and Kathleen Marchal (UGent)

(2022) CEREAL RESEARCH COMMUNICATIONS. 50. p.797-810
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OMEN : network-based driver gene identification using mutual exclusivity

Dries Van Daele, Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2022) BIOINFORMATICS. 38(12). p.3245-3251

Academic Bibliography

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Halvade somatic : somatic variant calling with Apache Spark

Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study

Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

BLSSpeller to discover novel regulatory motifs in maize

Extracting functional insights from loss-of-function screens using deep link prediction

Antibiotic cycling affects resistance evolution independently of collateral sensitivity

Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress

OMEN : network-based driver gene identification using mutual exclusivity

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