Ghent University Academic Bibliography

Journal Article
A1
open access

Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Genet Abay Shiferaw, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Tim Van Den Bossche (UGent) , Elien Vandermarliere (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(5). p.1365-1370

Add to list

Journal Article
A1
open access

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).

Add to list

Journal Article
A1
open access

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

Stephanie Smith, Shanshuo Zhu, Lisa Joos (UGent) , Ianto Roberts (UGent) , Natalia Nikonorova (UGent) , Lam Dai Vu (UGent) , Elisabeth Stes (UGent) , Hyunwoo Cho, Antoine Larrieu, Wei Xuan (UGent) , et al.

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(8). p.1248-1262

Add to list

Journal Article
A1
open access

Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

Add to list

Journal Article
A1
open access

COSS : a fast and user-friendly tool for spectral library searching

Genet Abay Shiferaw, Elien Vandermarliere (UGent) , Niels Hulstaert (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(7). p.2786-2793

Add to list

Journal Article
A1
open access

The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3

Sindisiwe G Buthelezi, Heini W Dirr, Ereck Chakauya, Rachel Chikwamba, Lennart Martens (UGent) , Tsepo L Tsekoa, Elien Vandermarliere (UGent) and Stoyan H Stoychev

(2018) PLOS ONE. 13(12).

Add to list

Journal Article
A1
open access

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins

Sigrid Gouma, Tessa Vermeire, Steven Van Gucht, Lennart Martens (UGent) , Veronik Hutse, Jeroen Cremer, Paul A Rota, Geert Leroux-Roels (UGent) , Marion Koopmans, Rob van Binnendijk, et al.

(2018) SCIENTIFIC REPORTS. 8.

Add to list

Cross-linked peptide identification : a computational forest of algorithms

Sule Yilmaz-Rumpf (UGent) , Genet Abay Shiferaw, Josep Rayo, Anastassios Economou, Lennart Martens (UGent) and Elien Vandermarliere (UGent)

(2018) MASS SPECTROMETRY REVIEWS. 37(6). p.738-749

Add to list

Journal Article
A2
open access

The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease

Bram De Wilde (UGent) , Anneleen Beckers (UGent) , Sven Lindner, Kristina Althoff, Katleen De Preter (UGent) , Pauline Depuydt, Pieter Mestdagh (UGent) , Tom Sante (UGent) , Steve Lefever (UGent) , Falk Hertwig, et al.

(2018) ONCOTARGET. 9(9). p.8334-8349

Add to list

Book Chapter

Methods to calculate spectrum similarity

Sule Yilmaz-Rumpf (UGent) , Elien Vandermarliere (UGent) and Lennart Martens (UGent)

(2017) Proteome bioinformatics. In Methods in Molecular Biology 1549. p.75-100

Academic Bibliography

Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

Scop3P : a comprehensive resource of human phosphosites within their full context

COSS : a fast and user-friendly tool for spectral library searching

The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins

Cross-linked peptide identification : a computational forest of algorithms

The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease

Methods to calculate spectrum similarity

Contents

Support

Contact