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msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level
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- Journal Article
- A1
- open access
Quality control for the target decoy approach for peptide identification
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- Journal Article
- A1
- open access
An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia
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- Journal Article
- A1
- open access
Robust summarization and inference in proteome-wide label-free quantification
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- Journal Article
- A1
- open access
MSqRob takes the missing hurdle : uniting intensity- and count-based proteomics
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- Miscellaneous
- open access
Pitfalls in re-analysis of observational omics studies: a post-mortem of the human pathology atlas
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- Conference Paper
- C3
- open access
Robust summarisation and inference for Label-Free Quantification
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Mass spectrometrists should search for all peptides, but assess only the ones they care about
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moFF : a robust and automated approach to extract peptide ion intensities
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Summarization vs. peptide-based models in label-free quantitative proteomics : performance, pitfalls, and data analysis guidelines