Ghent University Academic Bibliography

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- A1
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Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes

Anastasiia Gainullina, Denis A. Mogilenko, Li-Hao Huang, Helena Todorov, Vipin Narang, Ki-Wook Kim, Lim Sheau Yng, Andrew Kent, Baosen Jia, Kumba Seddu, et al.

(2023) CELL REPORTS. 42(2).
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Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures

Laetitia Dubouchet, Helena Todorov, Ruth Seurinck (UGent) , Nicolas Vallet, Sofie Van Gassen (UGent) , Aurelien Corneau, Catherine Blanc, Habib Zouali, Anne Boland, Jean-Francois Deleuze, et al.

(2022) SCIENCE TRANSLATIONAL MEDICINE. 14(633).
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CD8 memory precursor cell generation is a continuous process

Helena Todorov, Margaux Prieux, Daphne Laubreton, Matteo Bouvier, Shaoying Wang, Simon de Bernard, Christophe Arpin, Robrecht Cannoodt (UGent) , Wouter Saelens, Arnaud Bonnaffoux, et al.

(2022) ISCIENCE. 25(9).
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ImmGen at 15

Stephanie Vargas Aguilar, Oscar Aguilar, Rhys Allan, El Ad David Amir, Veronique Angeli, Maxim N. Artyomov, Natasha Asinovski, Jilian Astarita, K. Frank Austen, Geetika Bajpai, et al.

(2020) NATURE IMMUNOLOGY. 21(7). p.700-703
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TinGa : fast and flexible trajectory inference with Growing Neural Gas

Helena Todorov, Robrecht Cannoodt (UGent) , Wouter Saelens and Yvan Saeys (UGent)

(2020) BIOINFORMATICS. 36(Suppl 1). p.66-74
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- PhD Thesis
- open access
Structure learning to unravel mechanisms of the immune system

Helena Todorov

(2020)
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A comparison of single-cell trajectory inference methods

Wouter Saelens, Robrecht Cannoodt (UGent) , Helena Todorov and Yvan Saeys (UGent)

(2019) NATURE BIOTECHNOLOGY. 37(5). p.547-554
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Computational approaches for high-throughput single-cell data analysis

Helena Todorov and Yvan Saeys (UGent)

(2019) FEBS JOURNAL. 286(8). p.1451-1467
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- Conference Paper
- C3
Dynbenchmark : accuracy, scalability, robustness and usability of single-cell trajectory inference methods

Robrecht Cannoodt (UGent) , Wouter Saelens, Helena Todorov and Yvan Saeys (UGent)

(2019) Single Cell Biology, Keystone symposium, Abstracts.
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- Book Chapter
Network inference from single-cell transcriptomic data

Helena Todorov, Robrecht Cannoodt (UGent) , Wouter Saelens and Yvan Saeys (UGent)

(2019) Gene regulatory networks : methods and protocols. In Methods in Molecular Biology 1883. p.235-249

Academic Bibliography

Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes

Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures

CD8 memory precursor cell generation is a continuous process

ImmGen at 15

TinGa : fast and flexible trajectory inference with Growing Neural Gas

Structure learning to unravel mechanisms of the immune system

A comparison of single-cell trajectory inference methods

Computational approaches for high-throughput single-cell data analysis

Dynbenchmark : accuracy, scalability, robustness and usability of single-cell trajectory inference methods

Network inference from single-cell transcriptomic data

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