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Chromosome-scale assembly and annotation of the perennial ryegrass genome
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Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators
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Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account
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Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators
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- Journal Article
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Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
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Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds
(2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(5). p.2551-2559 -
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Gene space completeness in complex plant genomes
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Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase
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The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
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PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics
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Insights into the evolution of multicellularity from the sea lettuce genome
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PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
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- Journal Article
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A collection of conserved noncoding sequences to study gene regulation in flowering plants
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- Journal Article
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PLAZA 3.0 : an access point for plant comparative genomics
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- Journal Article
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Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf
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- Journal Article
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BLSSpeller : exhaustive comparative discovery of conserved cis-regulatory elements
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- Journal Article
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Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways
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- Miscellaneous
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Big data and other challenges in the quest for orthologs
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- Conference Paper
- P1
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A parallel, distributed-memory framework for comparative motif discovery
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pico-PLAZA, a genome database of microbial photosynthetic eukaryotes
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- Conference Paper
- C3
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Comparative motif discovery in the cloud
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TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes
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- Journal Article
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Toward community standards in the quest for orthologs
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Dissecting plant genomes with the PLAZA comparative genomics platform
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Comparative co-expression analysis in plant biology
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- Journal Article
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Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
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- Conference Paper
- C3
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A high performance computing approach to the dicovery of conserved motifs
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- Conference Paper
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Alignment-free genome-wide comparative motif discovery in 4 Monocot species
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- Journal Article
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PLAZA : a comparative genomics resource to study gene and genome evolution in plants