Ghent University Academic Bibliography

Your filters: cql: author="Winand, Raf" or (type any "bookEditor issueEditor" and editor="Winand, Raf")

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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).
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Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation

Bert Bogaerts, Raf Winand, Julien Van Braekel, Wesley Mattheus, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal (UGent) , Kevin Vanneste and Pieter-Jan Ceyssens

(2021) MICROORGANISMS. 9(4).
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Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

Laura Van Poelvoorde, Bert Bogaerts, Qiang Fu, Sigrid C. J. De Keersmaecker, Isabelle Thomas, Nina Van Goethem, Steven Van Gucht, Raf Winand, Xavier Saelens (UGent) , Nancy Roosens, et al.

(2021) MICROBIAL GENOMICS. 7(9).
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A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches

Bert Bogaerts, Thomas Delcourt, Karine Soetaert, Samira Boarbi, Pieter-Jan Ceyssens, Raf Winand, Julien Van Braekel, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal (UGent) , et al.

(2021) JOURNAL OF CLINICAL MICROBIOLOGY. 59(6).
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts, Stéphanie Nouws (UGent) , Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand, Qiang Fu, Florence Crombé, Denis Piérard, Kathleen Marchal (UGent) , et al.

(2021) MICROBIAL GENOMICS. 7(3).
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Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

Marie-Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova, Kevin Vanneste, Sigrid C. J. De Keersmaecker and Nancy H. C. Roosens

(2020) SCIENTIFIC REPORTS. 10(1).
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Strategy for the identification of micro-organisms producing food and feed products : bacteria producing food enzymes as study case

Marie Deckers, Kevin Vanneste, Raf Winand, Sigrid C. J. De Keersmaecker, Sarah Denayer, Marc Heyndrickx (UGent) , Dieter Deforce (UGent) , Marie-Alice Fraiture and Nancy H. C. Roosens

(2020) FOOD CHEMISTRY. 305.
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Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Bas Berbers, Assia Saltykova, Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal (UGent) , Raf Winand, Kevin Vanneste, Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2020) SCIENTIFIC REPORTS. 10(1).
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Targeting the 16S rRNA gene for bacterial identification in complex mixed samples : comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies

Raf Winand, Bert Bogaerts, Stefan Hoffman, Loïc Lefevre, Maud Delvoye, Julien Van Braekel, Qiang Fu, Nancy HC Roosens, Sigrid CJ De Keersmaecker and Kevin Vanneste

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(1).
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Validation of a bioinformatics workflow for routine analysis of whole-genome sequencing data and related challenges for pathogen typing in a European National Reference Center : Neisseria meningitidis as a proof-of-concept

Bert Bogaerts, Raf Winand, Qiang Fu, Julien Van Braekel, Pieter-Jan Ceyssens, Wesley Mattheus, Sophie Bertrand, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2019) FRONTIERS IN MICROBIOLOGY. 10.

Academic Bibliography

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

Strategy for the identification of micro-organisms producing food and feed products : bacteria producing food enzymes as study case

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Targeting the 16S rRNA gene for bacterial identification in complex mixed samples : comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies

Validation of a bioinformatics workflow for routine analysis of whole-genome sequencing data and related challenges for pathogen typing in a European National Reference Center : Neisseria meningitidis as a proof-of-concept

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