Ghent University Academic Bibliography

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Functionally annotating cysteine disulfides and metal binding sites in the plant kingdom using AlphaFold2 predicted structures

Patrick Willems (UGent) , Jingjing Huang (UGent) , Joris Messens and Frank Van Breusegem (UGent)

(2023) Free Radical Biology and Medicine. 194. p.220-229
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Cysteine thiol–based post-translational modification : what do we know about transcription factors?

Heng Zhou, Jingjing Huang (UGent) , Patrick Willems (UGent) , Frank Van Breusegem (UGent) and Yanjie Xie

(2023) TRENDS IN PLANT SCIENCE. 28(4). p.415-428
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Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

Patrick Willems (UGent) , Valerie Van Ruyskensvelde, Takanori Maruta (UGent) , Robin Pottie (UGent) , Álvaro Daniel Fernández Fernández, Jarne Pauwels (UGent) , Matthew A. Hannah, Kris Gevaert (UGent) , Frank Van Breusegem (UGent) and Katrien Van Der Kelen (UGent)

(2023) FREE RADICAL BIOLOGY AND MEDICINE. 200. p.117-129
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- Book Chapter
Analysis of ROS-triggered changes in the transcriptome

Patrick Willems (UGent)

(2022) Reactive oxygen species in plants : methods and protocols. In Methods in Molecular Biology 2526. p.277-288
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Cysteine-based redox switches in plant stress response

Jingjing Huang (UGent) , Patrick Willems (UGent) , Zeya Chen (UGent) , Lindsy De Veirman (UGent) and Frank Van Breusegem (UGent)

(2022) FREE RADICAL BIOLOGY AND MEDICINE. 189(S1). p.47-47
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- Journal Article
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To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

Patrick Willems (UGent) , Elvis Ndah (UGent) , Veronique Jonckheere (UGent) , Frank Van Breusegem (UGent) and Petra Van Damme (UGent)

(2022) FRONTIERS IN PLANT SCIENCE. 12.
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- Journal Article
- A2
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Hidden in plain sight : challenges in proteomics detection of small ORF-encoded polypeptides

Igor Fijalkowski (UGent) , Patrick Willems (UGent) , Veronique Jonckheere (UGent) , Laure Simoens (UGent) and Petra Van Damme (UGent)

(2022) MICROLIFE. 3.
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- Miscellaneous
- open access
Editorial: Plant protein termini: Their generation, modification and function

Patrick Willems (UGent) , Pitter F. Huesgen, Iris Finkemeier, Emmanuelle Graciet, Thierry Meinnel and Frank Van Breusegem (UGent)

(2022) Frontiers in Plant Science. 13.
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Contemporary proteomic strategies for cysteine redoxome profiling

Patrick Willems (UGent) , Frank Van Breusegem (UGent) and Jingjing Huang (UGent)

(2021) PLANT PHYSIOLOGY. 186(1). p.110-124
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Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling

Patrick Willems (UGent) , Ursula Fels, An Staes (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2021) JOURNAL OF PROTEOME RESEARCH. 20(2). p.1165-1177

Academic Bibliography

Functionally annotating cysteine disulfides and metal binding sites in the plant kingdom using AlphaFold2 predicted structures

Cysteine thiol–based post-translational modification : what do we know about transcription factors?

Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

Analysis of ROS-triggered changes in the transcriptome

Cysteine-based redox switches in plant stress response

To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

Hidden in plain sight : challenges in proteomics detection of small ORF-encoded polypeptides

Editorial: Plant protein termini: Their generation, modification and function

Contemporary proteomic strategies for cysteine redoxome profiling

Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling

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