Ghent University Academic Bibliography

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Protein dynamics and conformational heterogeneity in solution are not well captured by AlphaFold and other computational approaches

Wim Vranken, Bhawna Dixit (UGent) , Jose Gavalda-Garcia and An Ghysels (UGent)

(2025) ISMB/ECCB 2025, Abstracts.
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Gradations in protein dynamics captured by experimental NMR are not well represented by AlphaFold2 models and other computational metrics

Jose Gavalda-Garcia, Bhawna Dixit (UGent) , Adrián Díaz, An Ghysels (UGent) and Wim Vranken

(2025) JOURNAL OF MOLECULAR BIOLOGY. 437(2).
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Conformational dynamics of α‐1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and unglycosylated AGP

Bhawna Dixit (UGent) , Wim Vranken and An Ghysels (UGent)

(2024) PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 92(2). p.246-264
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Dissecting conformational dynamics of α-1 acid glycoprotein (AGP) : a study of glycosylated and un-glycosylated mutants

Bhawna Dixit (UGent) , Wim Vranken and An Ghysels (UGent)

(2022) Faculty of Engineering and Architecture Research Symposium 2022 (FEARS 2022), Abstracts.
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Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

Bhawna Dixit (UGent) , Wim Vranken and An Ghysels (UGent)

(2022) OncoPoint Symposium, 8th, Abstracts.
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Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

Bhawna Dixit (UGent) , Wim Vranken and An Ghysels (UGent)

(2022) BACR Annual meeting 2022 : Tumour plasticity and heterogeneity during cancer progression, Abstracts.
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Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

Bhawna Dixit (UGent) and Wim Vranken

(2021) BioSB 2021, Bioinformatics & Systems Biology Conference, Abstracts.
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b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59
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Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane Boone (UGent) , Pathmanaban Ramasamy (UGent) , Jasper Zuallaert (UGent) , Robbin Bouwmeester (UGent) , Berre Van Moer (UGent) , Davy Maddelein (UGent) , Demet Turan (UGent) , Niels Hulstaert (UGent) , Hannah Eeckhaut (UGent) , Elien Vandermarliere (UGent) , et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

Academic Bibliography

Protein dynamics and conformational heterogeneity in solution are not well captured by AlphaFold and other computational approaches

Gradations in protein dynamics captured by experimental NMR are not well represented by AlphaFold2 models and other computational metrics

Conformational dynamics of α‐1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and unglycosylated AGP

Dissecting conformational dynamics of α-1 acid glycoprotein (AGP) : a study of glycosylated and un-glycosylated mutants

Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

b2bTools : online predictions for protein biophysical features and their conservation

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Scop3P : a comprehensive resource of human phosphosites within their full context

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