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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices
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Time series modelling for wastewater-based epidemiology of COVID-19 : a nationwide study in 40 wastewater treatment plants of Belgium, February 2021 to June 2022
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Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
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Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
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First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015
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Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study