Ghent University Academic Bibliography

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A proteomics sample metadata representation for multiomics integration and big data analysis

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Kenneth Verheggen (UGent) , Helge Raeder, Frode S Berven, Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2020) MASS SPECTROMETRY REVIEWS. 39(3). p.292-306
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Proceedings of the EuBIC developer's meeting 2018

Sander Willems, David Bouyssié, Dieter Deforce (UGent) , Viktoria Dorfer, Vladimir Gorshkov, Dominik Kopczynski, Kris Laukens, Marie Locard-Paulet, Veit Schwämmle, Julian Uszkoreit, et al.

(2018) JOURNAL OF PROTEOMICS. 187. p.25-27
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Proceedings of the EuBIC Winter School 2017

Sander Willems, David Bouyssie, Matthieu David, Marie Locard-Paulet, Karl Mechtler, Veit Schwammle, Julian Uszkoreit, Marc Vaudel and Viktoria Dorfer

(2017) JOURNAL OF PROTEOMICS. 161. p.78-80
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An accessible proteogenomics informatics resource for cancer researchers

Matthew C Chambers, Pratik D Jagtap, James E Johnson, Thomas McGowan, Praveen Kumar, Getiria Onsongo, Candace R Guerrero, Harald Barsnes, Marc Vaudel, Lennart Martens (UGent) , et al.

(2017) CANCER RESEARCH. 77(21). p.e43-e46
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Database search engines : paradigms, challenges and solutions

Kenneth Verheggen (UGent) , Lennart Martens (UGent) , Frode S. Berven, Harald Barsnes and Marc Vaudel

(2016) Modern proteomics : sample preparation, analysis and practical applications. 919. p.147-156
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Exploring the potential of public proteomics data

Marc Vaudel, Kenneth Verheggen (UGent) , Attila Csordas, Helge Raeder, Frode S Berven, Lennart Martens (UGent) , Juan A Vizcaíno and Harald Barsnes

(2016) PROTEOMICS. 16(2). p.214-225
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JSparklines : making tabular proteomics data come alive

Harald Barsnes, Marc Vaudel and Lennart Martens (UGent)

(2015) PROTEOMICS. 15(8). p.1428-1431
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Pladipus enables universal distributed computing in proteomics bioinformatics

Kenneth Verheggen (UGent) , Davy Maddelein (UGent) , Niels Hulstaert (UGent) , Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2015) JOURNAL OF PROTEOME RESEARCH. 15(3). p.707-712
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PeptideShaker enables reanalysis of MS-derived proteomics data sets

Marc Vaudel, Julia M Burkhart, René P Zahedi, Eystein Oveland, Frode S Berven, Albert Sickmann, Lennart Martens (UGent) and Harald Barsnes (UGent)

(2015) NATURE BIOTECHNOLOGY. 33(1). p.22-24

Academic Bibliography

A proteomics sample metadata representation for multiomics integration and big data analysis

Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Proceedings of the EuBIC developer's meeting 2018

Proceedings of the EuBIC Winter School 2017

An accessible proteogenomics informatics resource for cancer researchers

Database search engines : paradigms, challenges and solutions

Exploring the potential of public proteomics data

JSparklines : making tabular proteomics data come alive

Pladipus enables universal distributed computing in proteomics bioinformatics

PeptideShaker enables reanalysis of MS-derived proteomics data sets

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