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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
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Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices
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Whole-genome sequence approach and phylogenomic stratification improve the association analysis of mutations with patient data in influenza surveillance
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Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study
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A general approach to identify low-frequency variants within influenza samples collected during routine surveillance
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Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products
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Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
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Case report : multidrug resistant Raoultella ornithinolytica in a septicemic calf