Ghent University Academic Bibliography

Journal Article
A2
open access

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere (UGent) , Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens and Kevin Vanneste

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 10.

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Journal Article
A1
open access

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Yari Van Laere (UGent) , Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2025) FRONTIERS IN MICROBIOLOGY. 16.

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Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrix

Bram Jacobs (UGent) , Bert Bogaerts, Marie Verhaegen, Kevin Vanneste, Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens, Andreja Rajkovic (UGent) , Jacques Mahillon, Tom Van Nieuwenhuysen and Koenraad Van Hoorde

(2025) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 439.

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Journal Article
A1
open access

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sigrid C. J. De Keersmaecker and Kevin Vanneste

(2024) SCIENTIFIC DATA. 11(1).

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Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Bram Jacobs (UGent) , Bert Bogaerts, Marie Verhaegen, Tom Van Nieuwenhuysen, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Jacques Mahillon, Andreja Rajkovic (UGent) and Koenraad Van Hoorde

(2024) 28th International ICFMH Conference (FoodMicro24), Abstract book. p.30-31

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Phenotypic testing remains a cornerstone in determining the cereulide production potential : lessons learnt from whole-genome sequencing

Bram Jacobs (UGent) , Bert Bogaerts, Soyeon Kim, Marie Verhaegen, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Julien Masquelier, Jacques Mahillon, Tom Van Nieuwenhuysen, et al.

(2024) International Conference on Bacillus anthracis, B. cereus and B. thuringiensis, Abstracts.

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Journal Article
A1
open access

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Bram Bloemen (UGent) , Mathieu Gand, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) SCIENTIFIC REPORTS. 13(1).

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Journal Article
A1
open access

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Johannes Berbers (UGent) , Kevin Vanneste, Nancy H. C. J. Roosens, Kathleen Marchal (UGent) , Pieter-Jan Ceyssens and Sigrid C. J. De Keersmaecker

(2023) MICROBIAL GENOMICS. 9(1).

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Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) 9th Applied Bioinformatics and Public Health Microbiology, Abstracts.

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Journal Article
A1
open access

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) FRONTIERS IN MICROBIOLOGY. 14.

Academic Bibliography

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrix

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Phenotypic testing remains a cornerstone in determining the cereulide production potential : lessons learnt from whole-genome sequencing

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

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