Ghent University Academic Bibliography

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

Rudy GE Van Eijsden, Catherine Stassen, Luk Daenen, Sebastiaan E Van Mulders, Prashant M Bapat, Verena Siewers, Katty VY Goossens, Jens Nielsen, Freddy R Delvaux, Paul Van Hummelen, et al.

(2013) BIOTECHNOLOGY LETTERS. 35(6). p.891-900

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Erythropoietin-induced changes in brain gene expression reveal induction of synaptic plasticity genes in experimental stroke

Manuela Mengozzi, Ilaria Cervellini, Pia Villa, Zübeyde Erbayraktar, Necati Gökmen, Osman Yilmaz, Serhat Erbayraktar, Mathini Manohasandra, Paul Van Hummelen, Peter Vandenabeele (UGent) , et al.

(2012) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 109(24). p.9617-9622

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Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations

Stefan Weckx, Joke Allemeersch, Roel Van der Meulen, Gino Vrancken, Geert Huys (UGent) , Peter Vandamme (UGent) , Paul Van Hummelen and Luc De Vuyst

(2011) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 77(2). p.618-626

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Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome

Stefan Weckx, Roel Van der Meulen, Joke Allemeersch, Geert Huys (UGent) , Peter Vandamme (UGent) , Paul Van Hummelen and Luc De Vuyst

(2010) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 76(16). p.5402-5408

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Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes

Naïra Naouar (UGent) , Klaas Vandepoele (UGent) , Tim Lammens (UGent) , Tineke Casneuf, Georg Zeller, Paul Van Hummelen, Detlef Weigel, Gunnar Rätsch, Dirk Inzé (UGent) , Martin Kuiper, et al.

(2009) Plant Journal. 57(1). p.184-194

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Conference Paper
C3
open access

Reduced metallothionein expression in colonic Crohn's disease: evidence for a new disease-modifying gene

Debby Laukens (UGent) , Harald Peeters (UGent) , Anouk Waeytens (UGent) , Sara Bogaert, Bert Vander Cruyssen (UGent) , Dirk Elewaut (UGent) , Filip De Keyser (UGent) , Herman Mielants (UGent) , Claude Cuvelier (UGent) , Kenny Knecht, et al.

(2008) JOURNAL OF CROHN'S AND COLITIS SUPPLEMENTS. 2(1). p.60-60

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Journal Article
A1
open access

The effect of a sertoli cell-selective knockout of the androgen receptor on testicular gene expression in prepubertal mice

Evi Denolet, Karel De Gendt, Joke Allemeersch, Kristof Engelen, Kathleen Marchal (UGent) , Paul Van Hummelen, Karen AL Tan, Richard M Sharpe, Philippa TK Saunders, Johannes V Swinnen, et al.

(2006) MOLECULAR ENDOCRINOLOGY. 20(2). p.321-334

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Characterization of the condensin component Cnap1 and protein kinase Melk as novel E2F target genes down-regulated by 1,25-dihydroxyvitamin D3

Lieve Verlinden, Guy Eelen, Ine Beullens, Mark Van Camp, Paul Van Hummelen, Kristof Engelen, Ruth Van Hellemont, Kathleen Marchal (UGent) , Bart De Moor, Floris Foijer, et al.

(2005) JOURNAL OF BIOLOGICAL CHEMISTRY. 280(45). p.37319-37330

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Journal Article
A1
open access

Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis

Gerrit Beemster (UGent) , Lieven De Veylder (UGent) , Steven Vercruysse, Gerrit West (UGent) , Debbie Rombaut (UGent) , Paul Van Hummelen, Arnaud Galichet, Wilhelm Gruissem, Dirk Inzé (UGent) and Marnik Vuylsteke (UGent)

(2005) PLANT PHYSIOLOGY. 138(2). p.734-743

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Gene expression profiling of cultured human NF1 heterozygous (NF1+/-) melanocytes reveals downregulation of a transcriptional cis-regulatory network mediating activation of the melanocyte-specific dopachrome tautomerase (DCT) gene

Joachim Boucneau, Sofie De Schepper (UGent) , Marnik Vuylsteke (UGent) , Paul Van Hummelen, Jean Naeyaert and Jo Lambert (UGent)

(2005) PIGMENT CELL RESEARCH. 18(4). p.285-299

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Genetic analysis of variation in gene expression in Arabidopsis thaliana

Marnik Vuylsteke (UGent) , Fred van Eeuwijk, Paul Van Hummelen, Martin Kuiper (UGent) and Marc Zabeau (UGent)

(2005) GENETICS. 171(3). p.1267-1275

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Journal Article
A1
open access

Benchmarking the CATMA microarray : a novel tool for Arabidopsis transcriptome analysis

Joke Allemeersch, Steffen Durinck, Rudy Vanderhaeghen (UGent) , Philippe Alard (UGent) , Ruth Maes, Kurt Seeuws, Tom Bogaert, Kathleen Coddens, Kirsten Deschouwer, Paul Van Hummelen, et al.

(2005) PLANT PHYSIOLOGY. 137(2). p.588-601

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Journal Article
A1
open access

Versatile gene-specific sequence tags for Arabidopsis functional genomics : trancript profiling and reverse genetics applications

Pierre Hilson (UGent) , Joke Allemeersch, Thomas Altmann, Sébastien Aubourg (UGent) , Alexandra Avon, Jim Beynon, Rishikesh P Bhalerao, Frédérique Bitton, Michel Caboche, Bernard Cannoot (UGent) , et al.

(2004) GENOME RESEARCH. 14(10B). p.2176-2189

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The effects of 1α,25-dihydroxyvitamin D₃ on the expression of DNA replication genes

Guy Eelen, Lieve Verlinden, Mark van Camp, Paul van Hummelen, Kathleen Marchal (UGent) , Bart de Moor, Chantal Mathieu, Geert Carmeliet, Roger Bouillon and Annemieke Verstuyf

(2004) JOURNAL OF BONE AND MINERAL RESEARCH. 19(1). p.133-146

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Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis

Annelies De Paepe (UGent) , Marnik Vuylsteke (UGent) , Paul Van Hummelen, Marc Zabeau (UGent) and Dominique Van Der Straeten (UGent)

(2004) PLANT JOURNAL. 39(4). p.537-559

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Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation

Kobe Vlieghe (UGent) , Marnik Vuylsteke (UGent) , Kobe Florquin (UGent) , Stephane Rombauts (UGent) , Sara Maes (UGent) , Sandra Ormenese, Paul Van Hummelen, Yves Van de Peer (UGent) , Dirk Inzé (UGent) and Lieven De Veylder (UGent)

(2003) JOURNAL OF CELL SCIENCE. 116(20). p.4249-4259

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Journal Article
A1
open access

CATMA : a complete Arabidopsis GST database

Mark L Crowe, Carine Serizet (UGent) , Vincent Thareau (UGent) , Sébastien Aubourg (UGent) , Pierre Rouzé (UGent) , Pierre Hilson (UGent) , Jim Beynon, Peter Weisbeek, Paul Van Hummelen, Philippe Reymond, et al.

(2003) NUCLEIC ACIDS RESEARCH. 31(1). p.156-158

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Comparison of different methodologies to identify differentially expressed genes in two-sample cDNA microarrays

Kathleen Marchal (UGent) , Kristof Engelen, Jos De Brabanter, Stein Aert, Bart De Moor, Turik Ayoubi and Paul Van Hummelen

(2002) JOURNAL OF BIOLOGICAL SYSTEMS. 10(4). p.409-430

Academic Bibliography

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

Erythropoietin-induced changes in brain gene expression reveal induction of synaptic plasticity genes in experimental stroke

Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes

Reduced metallothionein expression in colonic Crohn's disease: evidence for a new disease-modifying gene

The effect of a sertoli cell-selective knockout of the androgen receptor on testicular gene expression in prepubertal mice

Characterization of the condensin component Cnap1 and protein kinase Melk as novel E2F target genes down-regulated by 1,25-dihydroxyvitamin D3

Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis

Gene expression profiling of cultured human NF1 heterozygous (NF1+/-) melanocytes reveals downregulation of a transcriptional cis-regulatory network mediating activation of the melanocyte-specific dopachrome tautomerase (DCT) gene

Genetic analysis of variation in gene expression in Arabidopsis thaliana

Benchmarking the CATMA microarray : a novel tool for Arabidopsis transcriptome analysis

Versatile gene-specific sequence tags for Arabidopsis functional genomics : trancript profiling and reverse genetics applications

The effects of 1α,25-dihydroxyvitamin D₃ on the expression of DNA replication genes

Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis

Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation

CATMA : a complete Arabidopsis GST database

Comparison of different methodologies to identify differentially expressed genes in two-sample cDNA microarrays

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