Ghent University Academic Bibliography

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Learning the language of membrane targeting : AI-driven optimisation of plant cytochrome P450s in bacteria

Miguel De Block (UGent) , Camila Pontes, Miguel Romero-Durana, Lien De Wannemaeker (UGent) , Alfonso Valencia and Marjan De Mey (UGent)

(2026) AI, Engineering Biology and Beyond, Abstracts.
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ESM2-driven transmembrane domain selection for optimising plant P450s in microbial hosts

Miguel De Block (UGent) , Camila Pontes, Lien De Wannemaeker (UGent) , Miguel Romero, Alfonso Valencia and Marjan De Mey (UGent)

(2025) International Rhodobacter Symposium 2025, Abstracts & presentations.
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Leveraging ESM2 embeddings for transmembrane domain selection in the optimisation of plant cytochrome P450 functionality in microbial cell factories

Miguel De Block (UGent) , Camila Pontes, Lien De Wannemaeker (UGent) , Miguel Romero, Alfonso Valencia and Marjan De Mey (UGent)

(2024) 7th Applied Synthetic Biology in Europe (ASBE7), Abstracts.
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- Journal Article
- A1
- open access
Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven Verbeke (UGent) , Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, et al.

(2020) NATURE COMMUNICATIONS. 11(1).
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- Journal Article
- A1
- open access
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Joana Carlevaro-Fita, Andres Lanzos, Lars Feuerbach, Chen Hong, David Mas-Ponte, Jakob Skou Pedersen, Rory Johnson, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, et al.

(2020) COMMUNICATIONS BIOLOGY. 3(1).
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- Journal Article
- A1
- open access
Pan-cancer analysis of whole genomes

Peter J. Campbell, Gad Getz, Jan O. Korbel, Joshua M. Stuart, Jennifer L. Jennings, Lincoln D. Stein, Marc D. Perry, Hardeep K. Nahal-Bose, B. F. Francis Ouellette, Constance H. Li, et al.

(2020) NATURE. 578(7793). p.82-93

Academic Bibliography

Learning the language of membrane targeting : AI-driven optimisation of plant cytochrome P450s in bacteria

ESM2-driven transmembrane domain selection for optimising plant P450s in microbial hosts

Leveraging ESM2 embeddings for transmembrane domain selection in the optimisation of plant cytochrome P450 functionality in microbial cell factories

Pathway and network analysis of more than 2500 whole cancer genomes

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Pan-cancer analysis of whole genomes

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