Ghent University Academic Bibliography

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Large-scale event extraction from literature with multi-level gene normalization

Sofie Van Landeghem (UGent) , Jari Bjorne, Chih-Hsuan Wei, Kai Hakala, Sampo Pyysalo, Sophia Ananiadou, Hung-Yu Kao, Zhiyong Lu, Tapio Salakoski, Yves Van de Peer (UGent) , et al.

(2013) PLOS ONE. 8(4).
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Semantically linking molecular entities in literature through entity relationships

Sofie Van Landeghem (UGent) , Jari Björne, Thomas Abeel (UGent) , Bernard De Baets (UGent) , Tapio Salakoski and Yves Van de Peer (UGent)

(2012) BMC BIOINFORMATICS. 13.
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Exploring biomolecular literature with EVEX : connecting genes through events, homology, and indirect associations

Sofie Van Landeghem (UGent) , Kai Hakala, Samuel Rönnqvist, Tapio Salakoski, Yves Van de Peer (UGent) and Filip Ginter

(2012) ADVANCES IN BIOINFORMATICS. 2012.
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A kernel-based framework for learning graded relations from data

Willem Waegeman (UGent) , Tapio Pahikkala, Antti Airola, Tapio Salakoski, Michiel Stock (UGent) and Bernard De Baets (UGent)

(2012) IEEE TRANSACTIONS ON FUZZY SYSTEMS. 20(6). p.1090-1101
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Learning monadic and dyadic relations : three case studies in systems biology

Michiel Stock (UGent) , Tapio Pahikkala, Antti Airola, Tapio Salakoski, Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2012) Proceedings of the ECML/PKDD 2012 workshop on learning and discovery in symbolic systems biology. p.74-84
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- C3
Conditional ranking algorithms for efﬁcient object retrieval and object querying on relational data

Willem Waegeman (UGent) , Michiel Stock (UGent) , Bernard De Baets (UGent) , Tapio Pahikkala, Antti Airola and Tapio Salakoski

(2012) Dutch-Belgian Information Retrieval, 12th Workshop, Abstracts.
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PubMed-scale event extraction for post-translational modifications, epigenetics and protein structural relations

Jari Björne, Sofie Van Landeghem (UGent) , Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer (UGent) , Sophia Ananiadou and Tapio Salakoski

(2012) Proceedings of the 2012 workshop on biomedical natural language processing. p.82-90
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EVEX: a PubMed-scale resource for homology-based generalization of text mining predictions

Sofie Van Landeghem (UGent) , Filip Ginter, Yves Van de Peer (UGent) and Tapio Salakoski

(2011) Proceedings of the 2011 workshop on biomedical natural language processing. p.28-37
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An experimental comparison of cross-validation techniques for estimating the area under the ROC curve

Antti Airola, Tapio Pahikkala, Willem Waegeman (UGent) , Bernard De Baets (UGent) and Tapio Salakoski

(2011) COMPUTATIONAL STATISTICS & DATA ANALYSIS. 55(4). p.1828-1844
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Learning valued relations from data

Willem Waegeman (UGent) , Tapio Pahikkala, Antti Airola, Tapio Salakoski and Bernard De Baets (UGent)

(2011) Advances in Intelligent and Soft Computing. 107. p.257-268

Academic Bibliography

Large-scale event extraction from literature with multi-level gene normalization

Semantically linking molecular entities in literature through entity relationships

Exploring biomolecular literature with EVEX : connecting genes through events, homology, and indirect associations

A kernel-based framework for learning graded relations from data

Learning monadic and dyadic relations : three case studies in systems biology

Conditional ranking algorithms for efﬁcient object retrieval and object querying on relational data

PubMed-scale event extraction for post-translational modifications, epigenetics and protein structural relations

EVEX: a PubMed-scale resource for homology-based generalization of text mining predictions

An experimental comparison of cross-validation techniques for estimating the area under the ROC curve

Learning valued relations from data

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