Ghent University Academic Bibliography

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Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sigrid C. J. De Keersmaecker and Kevin Vanneste

(2024) SCIENTIFIC DATA. 11(1).
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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence Buytaers, Bavo Verhaegen (UGent) , Tom Van Nieuwenhuysen (UGent) , Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Bram Jacobs (UGent) , Bert Bogaerts, Marie Verhaegen, Tom Van Nieuwenhuysen, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Jacques Mahillon, Andreja Rajkovic (UGent) and Koenraad Van Hoorde

(2024) 28th International ICFMH Conference (FoodMicro24), Abstract book. p.30-31
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Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Laura Van Poelvoorde, François E. Dufrasne, Steven Van Gucht, Xavier Saelens (UGent) and Nancy H. C. Roosens

(2023) CURRENT ISSUES IN MOLECULAR BIOLOGY. 45(3). p.2521-2532
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Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Bram Bloemen (UGent) , Mathieu Gand, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) SCIENTIFIC REPORTS. 13(1).
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Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) 9th Applied Bioinformatics and Public Health Microbiology, Abstracts.
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Stéphanie Nouws (UGent) , Bavo Verhaegen (UGent) , Sarah Denayer, Florence Crombé (UGent) , Denis Piérard (UGent) , Bert Bogaerts, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Whole-genome sequence approach and phylogenomic stratification improve the association analysis of mutations with patient data in influenza surveillance

Laura Van Poelvoorde, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Isabelle Thomas, Nina Van Goethem, Steven Van Gucht, Xavier Saelens (UGent) and Nancy H. C. Roosens

(2022) FRONTIERS IN MICROBIOLOGY. 13.
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Optimization and application of a multiplex digital PCR assay for the detection of SARS-CoV-2 variants of concern in Belgian influent wastewater

Tim Boogaerts, Siel Van den Bogaert, Laura A. E. Van Poelvoorde, Diala El Masri, Naomi De Roeck, Nancy H. C. Roosens, Marie Lesenfants, Lies Lahousse (UGent) , Koenraad Van Hoorde, Alexander L. N. van Nuijs, et al.

(2022) VIRUSES-BASEL. 14(3).

Academic Bibliography

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Whole-genome sequence approach and phylogenomic stratification improve the association analysis of mutations with patient data in influenza surveillance

Optimization and application of a multiplex digital PCR assay for the detection of SARS-CoV-2 variants of concern in Belgian influent wastewater

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