Ghent University Academic Bibliography

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Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Laura Van Poelvoorde (UGent) , François E. Dufrasne, Steven Van Gucht, Xavier Saelens (UGent) and Nancy H. C. Roosens

(2023) CURRENT ISSUES IN MOLECULAR BIOLOGY. 45(3). p.2521-2532
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Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Stéphanie Nouws (UGent) , Bavo Verhaegen (UGent) , Sarah Denayer, Florence Crombé (UGent) , Denis Piérard (UGent) , Bert Bogaerts (UGent) , Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Whole-genome sequence approach and phylogenomic stratification improve the association analysis of mutations with patient data in influenza surveillance

Laura Van Poelvoorde (UGent) , Kevin Vanneste, Sigrid C. J. De Keersmaecker, Isabelle Thomas, Nina Van Goethem, Steven Van Gucht, Xavier Saelens (UGent) and Nancy H. C. Roosens

(2022) FRONTIERS IN MICROBIOLOGY. 13.
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Optimization and application of a multiplex digital PCR assay for the detection of SARS-CoV-2 variants of concern in Belgian influent wastewater

Tim Boogaerts, Siel Van den Bogaert, Laura A. E. Van Poelvoorde, Diala El Masri, Naomi De Roeck, Nancy H. C. Roosens, Marie Lesenfants, Lies Lahousse (UGent) , Koenraad Van Hoorde, Alexander L. N. van Nuijs, et al.

(2022) VIRUSES-BASEL. 14(3).
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Food Enzyme Database (FEDA) : a web application gathering information about food enzyme preparations available on the European market

Marie Deckers, Julien Van Braeckel, Kevin Vanneste, Dieter Deforce (UGent) , Marie-Alice Fraiture and Nancy H. C. Roosens

(2021) DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.
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Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

Jolien D'aes, Marie-Alice Fraiture, Bert Bogaerts (UGent) , Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2021) FOODS. 10(11).
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A systematic review and meta-analysis of host genetic factors associated with influenza severity

Nina Van Goethem, Célestin Danwang, Nathalie Bossuyt, Herman Van Oyen (UGent) , Nancy H. C. Roosens and Annie Robert

(2021) BMC GENOMICS. 22(1).
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts (UGent) , Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).
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Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

Laura Van Poelvoorde (UGent) , Thomas Delcourt, Wim Coucke, Philippe Herman, Sigrid C. J. De Keersmaecker, Xavier Saelens (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2021) FRONTIERS IN MICROBIOLOGY. 12.

Academic Bibliography

Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Whole-genome sequence approach and phylogenomic stratification improve the association analysis of mutations with patient data in influenza surveillance

Optimization and application of a multiplex digital PCR assay for the detection of SARS-CoV-2 variants of concern in Belgian influent wastewater

Food Enzyme Database (FEDA) : a web application gathering information about food enzyme preparations available on the European market

Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

A systematic review and meta-analysis of host genetic factors associated with influenza severity

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

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