Ghent University Academic Bibliography

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Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Yari Van Laere (UGent) , Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2025) FRONTIERS IN MICROBIOLOGY. 16.
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Detection of Bacillus production strains and contaminants in food enzyme products

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 11.
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Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing : a case study on fluoroquinolone resistance

Bram Bloemen (UGent) , Mathieu Gand, Moniek Ringenier (UGent) , Bert Bogaerts, Kevin Vanneste, Kathleen Marchal (UGent) , Nancy H. C. Roosens, Jeroen Dewulf (UGent) , Filip Boyen (UGent) and Sigrid C. J. De Keersmaecker

(2025) FRONTIERS IN MICROBIOLOGY. 16.
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Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sigrid C. J. De Keersmaecker and Kevin Vanneste

(2024) SCIENTIFIC DATA. 11(1).
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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence Buytaers, Bavo Verhaegen (UGent) , Tom Van Nieuwenhuysen (UGent) , Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Bram Jacobs (UGent) , Bert Bogaerts, Marie Verhaegen, Tom Van Nieuwenhuysen, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Jacques Mahillon, Andreja Rajkovic (UGent) and Koenraad Van Hoorde

(2024) 28th International ICFMH Conference (FoodMicro24), Abstract book. p.30-31
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Phenotypic testing remains a cornerstone in determining the cereulide production potential : lessons learnt from whole-genome sequencing

Bram Jacobs (UGent) , Bert Bogaerts, Soyeon Kim, Marie Verhaegen, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Julien Masquelier, Jacques Mahillon, Tom Van Nieuwenhuysen, et al.

(2024) International Conference on Bacillus anthracis, B. cereus and B. thuringiensis, Abstracts.
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Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Laura Van Poelvoorde, François E. Dufrasne, Steven Van Gucht, Xavier Saelens (UGent) and Nancy H. C. Roosens

(2023) CURRENT ISSUES IN MOLECULAR BIOLOGY. 45(3). p.2521-2532
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Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Bram Bloemen (UGent) , Mathieu Gand, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) SCIENTIFIC REPORTS. 13(1).
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Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) 9th Applied Bioinformatics and Public Health Microbiology, Abstracts.

Academic Bibliography

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Detection of Bacillus production strains and contaminants in food enzyme products

Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing : a case study on fluoroquinolone resistance

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Whole-genome sequencing of foodborne Bacillus cereus isolates indicates no clear association between their genomic diversity and food matrix types

Phenotypic testing remains a cornerstone in determining the cereulide production potential : lessons learnt from whole-genome sequencing

Development of digital droplet PCR targeting the influenza H3N2 sseltamivir-resistant E119V mutation and its performance through the use of reverse genetics mutants

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

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