Ghent University Academic Bibliography

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Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs

Beatriz F. Côrte-Real, Ibrahim Hamad, Rebeca Arroyo Hornero, Sabrina Geisberger, Joris Roels (UGent) , Lauren Van Zeebroeck, Aleksandra Dyczko, Marike W. van Gisbergen, Henry Kurniawan, Allon Wagner, et al.

(2023) CELL METABOLISM. 35(2). p.299-315
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Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging

Joris Roels (UGent) , Ann-Sophie De Craemer (UGent) , Thomas Renson (UGent) , Manouk de Hooge (UGent) , Arne Gevaert (UGent) , Thomas Van Den Berghe (UGent) , Lennart Jans (UGent) , Nele Herregods (UGent) , Philippe Carron (UGent) , Filip Van den Bosch (UGent) , et al.

(2023) ARTHRITIS & RHEUMATOLOGY. 75(12). p.2169-2177
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A machine learning pipeline for prediction of bone marrow oedema along the sacroiliac joints on magnetic resonance imaging

Joris Roels (UGent) , Ann-Sophie De Craemer (UGent) , Thomas Renson (UGent) , Manouk de Hooge (UGent) , Arne Gevaert (UGent) , Lennart Jans (UGent) , Nele Herregods (UGent) , Thomas Van Den Berghe (UGent) , Philippe Carron (UGent) , Filip Van den Bosch (UGent) , et al.

(2022) Book of Abstracts 13th International Congress on Spondyloarthritides. In 13th International Congress on Spondyloarthritides p.12-12
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A miniaturised, fully integrated NDIR CO2 sensor on-chip

Xiaoning Jia, Joris Roels, Roel Baets (UGent) and Günther Roelkens (UGent)

(2021) SENSORS. 21(16).
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Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen Remmerie (UGent) , Liesbet Martens (UGent) , Tinne Thoné (UGent) , Angela Castoldi, Ruth Seurinck (UGent) , Benjamin Pavie (UGent) , Joris Roels (UGent) , Bavo Vanneste (UGent) , Sofie De Prijck (UGent) , Mathias Vanhockerhout (UGent) , et al.

(2020) IMMUNITY. 53(3). p.641-657.e1–e14
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An interactive ImageJ plugin for semi-automated image denoising in electron microscopy

Joris Roels (UGent) , Frank Vernaillen, Anna Kremer (UGent) , Amanda Gonçalves (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Bart Goossens (UGent) , Wilfried Philips (UGent) , Saskia Lippens (UGent) and Yvan Saeys (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).
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A miniaturized non-dispersive infrared CO2 sensor based on a 2D integrating cylinder

Xiaoning Jia, Günther Roelkens (UGent) , Roel Baets (UGent) and Joris Roels

(2019) Proceedings Optical Sensors and Sensing Congress. In OSA Technical Digest p.2404-2405
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Domain adaptive segmentation in volume electron microscopy imaging

Joris Roels (UGent) , Julian Hennies, Yvan Saeys (UGent) , Wilfried Philips (UGent) and Anna Kreshuk

(2019) 2019 IEEE 16th international symposium on biomedical imaging (ISBI 2019). In IEEE International Symposium on Biomedical Imaging p.1519-1522
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- PhD Thesis
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Geautomatiseerde segmentatie van 3D-elektronenmicroscopiebeelden

Joris Roels (UGent)

(2019)
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On-chip non-dispersive infrared CO2 sensor based on an integrating cylinder

Xiaoning Jia, Joris Roels, Roel Baets (UGent) and Günther Roelkens (UGent)

(2019) SENSORS. 19(19).
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An overview of state-of-the-art image restoration in electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Aleksandra Pizurica (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2018) JOURNAL OF MICROSCOPY. 271(3). p.239-254
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Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2017) 2017 IEEE 14th international symposium on biomedical imaging (ISBI 2017). p.633-637
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Lower bounds on the robustness to adversarial perturbations

Jonathan Peck (UGent) , Joris Roels (UGent) , Bart Goossens (UGent) and Yvan Saeys (UGent)

(2017) Advances in neural information processing systems 30 (NIPS 2017). In Advances in Neural Information Processing Systems 30. p.804-813
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Semi-automated segmentation in 3D electron microscopy imaging

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) Knowledge For Growth, Abstracts.
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Automated Membrane Detection in Electron Microscopy using Convolutional Neural Networks

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) Belgian-Dutch Conference on Machine Learning, Abstracts.
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Decreasing time consumption of microscopy image segmentation through parallel processing on the GPU

Joris Roels (UGent) , Jonas De Vylder (UGent) , Yvan Saeys (UGent) , Bart Goossens and Wilfried Philips (UGent)

(2016) Lecture Notes in Computer Science. 10016. p.147-159
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Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) IEEE Engineering in Medicine and Biology Society Conference Proceedings. p.443-447
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From a biological sample to high-quality digital image representation : avoiding and restoring image artifacts through proper acquisition and image restoration

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Chris Guerin (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) EMBL workshop 2016, Abstracts.
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- Miscellaneous
Quasar tutorial: High-level programming of Heterogeneous Hardware

Jonas De Vylder (UGent) , Dirk Van Haerenborgh (UGent) , Joris Roels (UGent) and Bart Goossens (UGent)

(2016)
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Image degradation in microscopic images : avoidance, artifacts and solutions

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Saskia Lippens (UGent) , Hiep Luong (UGent) , Chris Guerin (UGent) and Wilfried Philips (UGent)

(2016) Advances in Anatomy Embryology and Cell Biology. 219. p.41-67
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Superpixel quality in microscopy images: the impact of noise & denoising

Joris Roels (UGent) , Jonas De Vylder (UGent) , Jan Aelterman (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2016) IFMBE Proceedings. 57. p.258-263
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Noise analysis in 3D electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Saskia Lippens (UGent) , Yvan Saeys (UGent) and Wilfried Philips (UGent)

(2015) Dutch Bio-Medical Engineering Conference, Abstracts.
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Image optimization for 3D electron microscopy images

Joris Roels (UGent) , Jan Aelterman (UGent) , Hiep Luong (UGent) , Jonas De Vylder (UGent) , Wilfried Philips (UGent) , Saskia Lippens (UGent) and Yvan Saeys (UGent)

(2014) 3View Users Group Meeting and Symposium, Abstracts.
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Noise analysis and removal in 3D electron microscopy

Joris Roels (UGent) , Jan Aelterman (UGent) , Jonas De Vylder (UGent) , Hiep Luong (UGent) , Yvan Saeys (UGent) , Saskia Lippens (UGent) and Wilfried Philips (UGent)

(2014) LECTURE NOTES IN COMPUTER SCIENCE. 8887. p.31-40
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Ultracompact phase modulator based on a cascade of NEMS-operated slot waveguides fabricated in silicon-on-insulator

Karel Van Acoleyen (UGent) , Joris Roels (UGent) , Pauline Mechet (UGent) , Tom Claes (UGent) , Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2012) IEEE PHOTONICS JOURNAL. 4(3). p.779-788
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Parametric instability of an integrated micromechanical oscillator by means of active optomechanical feedback

Joris Roels (UGent) , Björn Maes (UGent) , Wim Bogaerts (UGent) , Roel Baets (UGent) and Dries Van Thourhout (UGent)

(2011) OPTICS EXPRESS. 19(14). p.13081-13088
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NEMS-based optical phase modulator fabricated on silicon-on-insulator

Karel Van Acoleyen (UGent) , Joris Roels, Tom Claes (UGent) , Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2011) 2011 IEEE 8th International Conference on Group IV Photonics (GFP). p.371-373
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Optomechanical device actuation through the optical gradient force

Dries Van Thourhout (UGent) and Joris Roels (UGent)

(2010) NATURE PHOTONICS. 4(4). p.211-217
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Integrated optomechanical circuits

Joris Roels (UGent) , Björn Maes (UGent) , Roel Baets (UGent) and Dries Van Thourhout (UGent)

(2010) Integrated Photonics Research, Silicon and Nano Photonics, Proceedings.
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Integrated optical gas sensors on silicon-on-insulator platform

Nebiyu Adello Yebo (UGent) , Dirk Taillaert (UGent) , Joris Roels (UGent) , D Lahem, M Debliquy, Zeger Hens and Roel Baets (UGent)

(2010) Integrated Photonics Research, Silicon and Nano Photonics, Proceedings.
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Silicon optomechanics

Joris Roels (UGent) , Björn Maes (UGent) , Roel Baets (UGent) and Dries Van Thourhout (UGent)

(2010) 2010 IEEE Photonics Society summer topical meeting series. p.90-91
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Grating light valves: a SiGe based approach towards monolithic integration of MOEMS

Sukumar Rudra (UGent) , Joris Roels (UGent) , G Bryce, S Severi, A Witvrouw, Roel Baets (UGent) and Dries Van Thourhout (UGent)

(2009) Proceedings of the 2009 Annual Symposium of the IEEE Photonics Benelux Chapter. p.109-112
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Integrated optical gas sensors on silicon-on-insulator platform

Nebiyu Adello Yebo (UGent) , Dirk Taillaert (UGent) , Joris Roels (UGent) , D Lahem, M Debliquy, Petra Lommens (UGent) , Zeger Hens (UGent) and Roel Baets (UGent)

(2009) Proceedings of the 2009 Annual Symposium of the IEEE Photonics Benelux Chapter. p.153-156
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Optical gradient dipole forces for nanophotonic devices on a silicon-on-insulator chip

Joris Roels (UGent) , Björn Maes (UGent) , Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) Proceedings of the 2009 Annual Symposium of the IEEE Photonics Benelux Chapter. p.21-24
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- C3
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Silicon optomechanics

Joris Roels (UGent) and Dries Van Thourhout (UGent)

(2009) IEEE Photonics Society Benelux annual workshop, 13th, Presentations.
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- C3
Attractive and repulsive optical gradient forces between silicon waveguides

Joris Roels (UGent) , I De Vlaminck, Björn Maes (UGent) , L Lagae, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) Quantum Optics of Nano- and Micromechanical Systems.
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Tunable optical forces between nanophotonic waveguides

Joris Roels (UGent) , Iwijn De Vlaminck, Liesbet Lagae, Björn Maes (UGent) , Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) NATURE NANOTECHNOLOGY. 4(8). p.510-513
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Silicon-on-Insulator (SOI) ring resonator-based integrated optical hydrogen sensor

Nebiyu Adello Yebo (UGent) , Dirk Taillaert (UGent) , Joris Roels (UGent) , D Lahem, M Debliquy, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) IEEE PHOTONICS TECHNOLOGY LETTERS. 21(14). p.960-962
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Optical gradient force in a slot waveguide on a silicon-on-insulator-chip

Joris Roels (UGent) , Björn Maes (UGent) , Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) IEEE Lasers and Electro-Optics Society (LEOS) Annual Meeting. p.223-224
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Optomechanical interactions between nanophotonic wires on a silicon-on-insulator-chip

Joris Roels (UGent) , I De Vlaeminck, Björn Maes (UGent) , L Lagae, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2009) 2009 IEEE/LEOS International Conference on Optical MEMS and Nanophotonics. p.33-34
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The force of light

Joris Roels (UGent) and Björn Maes (UGent)

(2009) UGent-FirW Doctoraatssymposium, 10e. p.286-287
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Measuring the time-of-flight with an optical MEMS-modulator

Joris Roels (UGent) , W Van der Tempel, Davy Van Nieuwenhove (UGent) , R Grootjans, M Kuijk, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2008) Technology for Photonics Integration, Book of abstracts. p.40-40
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Continuous time-of-flight ranging using a MEMS diffractive subwavelength period grating (de)modulator

Joris Roels (UGent) , Ward Van Der Tempel, Daniël Van Nieuwenhove, Riemer Grootjans, Maarten Kuijk, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2008) IEEE PHOTONICS TECHNOLOGY LETTERS. 20(22). p.1827-1829
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A dynamic subwavelength pitch grating modulator for continuous time-of-flight ranging with optical mixing

Joris Roels (UGent) , W Van der Tempel, Davy Van Nieuwenhove (UGent) , R Grootjans, M Kuijk, Dries Van Thourhout (UGent) and Roel Baets (UGent)

(2008) 2008 IEEE/LEOS INTERNATIONAL CONFERENCE ON OPTICAL MEMS AND NANOPHOTONICS. p.176-177
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Silicon photonics

Roel Baets (UGent) , Pieter Dumon (UGent) , Wim Bogaerts (UGent) , Günther Roelkens (UGent) , Jan Van Campenhout (UGent) , Dirk Taillaert (UGent) , Joost Brouckaert (UGent) , Katrien De Vos (UGent) , Joris Roels (UGent) , shankar kumar Selvaraja (UGent) , et al.

(2007) 2007 International symposium on VLSI Technology, Systems and Applications (VLSI-TSA), Proceedings of technical papers. p.7-9
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Integrated nanomechanical motion detection by means of optical evanescent wave coupling - art. no. 64640E

I DE VLAMINCK, Joris Roels (UGent) , Dirk Taillaert (UGent) , Dries Van Thourhout (UGent) , L LAGAE, Roel Baets (UGent) and G BORGHS

(2007) MEMS/MOEMS COMPONENTS AND THEIR APPLICATIONS IV. 6464.
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State of the art modulator approaches for continuous time-of-flight range finding

W VAN DER TEMPEL, D VAN NIEUWENHOVE, R GROOTJANS, L JOVANOV, Joris Roels (UGent) , Aleksandra Pizurica (UGent) , Dries Van Thourhout (UGent) , Roel Baets (UGent) , Wilfried Philips (UGent) and Maarten Kuijk (UGent)

(2007) Proceedings of the 12th Annual Symposium of the IEEE/LEOS Benelux Chapter. p.63-66
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Detection of nanomechanical motion by evanescent light wave coupling

I DE VLAMINCK, Joris Roels (UGent) , Dirk Taillaert (UGent) , Dries Van Thourhout (UGent) , Roel Baets (UGent) , L LAGAE and G BORGHS

(2007) APPLIED PHYSICS LETTERS. 90(23).
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A nanophotonic NEMS-modulator in silicon-on-insulator (abstract)

Joris Roels (UGent) , I DE VLAMINCK, Dries Van Thourhout (UGent) , L LAGAE, Dirk Taillaert (UGent) and Roel Baets (UGent)

(2006) Proceedings of the 7th UGent PhD symposium. p.43-43
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A nanophotonic NEMS-modulator in silicon-on-insulator

Joris Roels (UGent) , I DE VLAMINCK, Dries Van Thourhout (UGent) , L LAGAE, Dirk Taillaert (UGent) and Roel Baets (UGent)

(2006) 2006 Annual Symposium of the IEEE/LEOS Benelux Chapter. p.49-52

Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs

Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging

A machine learning pipeline for prediction of bone marrow oedema along the sacroiliac joints on magnetic resonance imaging

A miniaturised, fully integrated NDIR CO2 sensor on-chip

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

An interactive ImageJ plugin for semi-automated image denoising in electron microscopy

A miniaturized non-dispersive infrared CO2 sensor based on a 2D integrating cylinder

Domain adaptive segmentation in volume electron microscopy imaging

Geautomatiseerde segmentatie van 3D-elektronenmicroscopiebeelden

On-chip non-dispersive infrared CO2 sensor based on an integrating cylinder

An overview of state-of-the-art image restoration in electron microscopy

Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy

Lower bounds on the robustness to adversarial perturbations

Semi-automated segmentation in 3D electron microscopy imaging

Automated Membrane Detection in Electron Microscopy using Convolutional Neural Networks

Decreasing time consumption of microscopy image segmentation through parallel processing on the GPU

Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization

From a biological sample to high-quality digital image representation : avoiding and restoring image artifacts through proper acquisition and image restoration

Quasar tutorial: High-level programming of Heterogeneous Hardware

Image degradation in microscopic images : avoidance, artifacts and solutions

Superpixel quality in microscopy images: the impact of noise & denoising

Noise analysis in 3D electron microscopy

Image optimization for 3D electron microscopy images

Noise analysis and removal in 3D electron microscopy

Ultracompact phase modulator based on a cascade of NEMS-operated slot waveguides fabricated in silicon-on-insulator

Parametric instability of an integrated micromechanical oscillator by means of active optomechanical feedback

NEMS-based optical phase modulator fabricated on silicon-on-insulator

Optomechanical device actuation through the optical gradient force

Integrated optomechanical circuits

Integrated optical gas sensors on silicon-on-insulator platform

Silicon optomechanics

Grating light valves: a SiGe based approach towards monolithic integration of MOEMS

Integrated optical gas sensors on silicon-on-insulator platform

Optical gradient dipole forces for nanophotonic devices on a silicon-on-insulator chip

Silicon optomechanics

Attractive and repulsive optical gradient forces between silicon waveguides

Tunable optical forces between nanophotonic waveguides

Silicon-on-Insulator (SOI) ring resonator-based integrated optical hydrogen sensor

Optical gradient force in a slot waveguide on a silicon-on-insulator-chip

Optomechanical interactions between nanophotonic wires on a silicon-on-insulator-chip

The force of light

Measuring the time-of-flight with an optical MEMS-modulator

Continuous time-of-flight ranging using a MEMS diffractive subwavelength period grating (de)modulator

A dynamic subwavelength pitch grating modulator for continuous time-of-flight ranging with optical mixing

Silicon photonics

Integrated nanomechanical motion detection by means of optical evanescent wave coupling - art. no. 64640E

State of the art modulator approaches for continuous time-of-flight range finding

Detection of nanomechanical motion by evanescent light wave coupling

A nanophotonic NEMS-modulator in silicon-on-insulator (abstract)

A nanophotonic NEMS-modulator in silicon-on-insulator