Ghent University Academic Bibliography

Your filters: cql: author="Reumers, Joke" or (type any "bookEditor issueEditor" and editor="Reumers, Joke")

Add to list
- Journal Article
- A1
- open access
Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

Viacheslav Mylka (UGent) , Irina Matetovici, Suresh Poovathingal, Jeroen Aerts, Niels Vandamme (UGent) , Ruth Seurinck (UGent) , Kevin Verstaen (UGent) , Gert Hulselmans, Silvie van den Hoecke, Isabelle Scheyltjens, et al.

(2022) GENOME BIOLOGY. 23(1).
Add to list
A scalable SCENIC workflow for single-cell gene regulatory network analysis

Bram van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck (UGent) , Wouter Saelens (UGent) , Robrecht Cannoodt (UGent) , Quentin Rouchon (UGent) , et al.

(2020) NATURE PROTOCOLS. 15(7). p.2247-2276
Add to list
- Journal Article
- A1
- open access
Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2017) PLOS ONE. 12(3).
Add to list
- Conference Paper
- P1
- open access
Performance analysis of a parallel, multi-node pipeline for DNA sequencing

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2016) PARALLEL PROCESSING AND APPLIED MATHEMATICS, PPAM 2015, PT II. In Lecture Notes in Computer Science 9574. p.233-242
Add to list
- Journal Article
- A1
- open access
Halvade: scalable sequence analysis with MapReduce

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2015) BIOINFORMATICS. 31(15). p.2482-2488
Add to list
- Journal Article
- A1
- open access
elPrep: high-performance preparation of sequence alignment/map files for variant calling

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Joke Reumers

(2015) PLOS ONE. 10(7).
Add to list
- Journal Article
- A1
- open access
QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles

Koen van der Borght, Kim Thys, Yves Wetzels, Lieven Clement (UGent) , Bie Verbist (UGent) , Joke Reumers, Herman van Vlijmen and Jeroen Aerssens

(2015) BMC BIOINFORMATICS. 16.
Add to list
VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering

Bie Verbist (UGent) , Kim Thys, Joke Reumers, Yves Wetzels, Koen Van der Borght, Willem Talloen, Jeroen Aerssens, Lieven Clement (UGent) and Olivier Thas (UGent)

(2015) BIOINFORMATICS. 31(1). p.94-101
Add to list
- Journal Article
- A1
- open access
ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering

Bie Verbist (UGent) , Lieven Clement (UGent) , Joke Reumers, Kim Thys, Alexander Vapirev, Willem Talloen, Yves Wetzels, Joris Meys (UGent) , Jeroen Aerssens, Luc Bijnens, et al.

(2015) BMC BIOINFORMATICS. 16.
Add to list
- Journal Article
- A1
- open access
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations

Yao-Cheng Lin (UGent) , Morgane Boone (UGent) , Leander Meuris (UGent) , Irma Lemmens (UGent) , Nadine Van Roy (UGent) , Arne Soete (UGent) , Joke Reumers, Matthieu Moisse, Stéphane Plaisance (UGent) , Radoje Drmanac, et al.

(2014) NATURE COMMUNICATIONS. 5.

Academic Bibliography

Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce

Performance analysis of a parallel, multi-node pipeline for DNA sequencing

Halvade: scalable sequence analysis with MapReduce

elPrep: high-performance preparation of sequence alignment/map files for variant calling

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations

Contents

Support

Contact