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- 2017
- Assessment of faecal microbial transfer in irritable bowel syndrome with severe bloating
- Dialister as a microbial marker of disease activity in spondyloarthritis
- 2016
- The probiotic Butyricicoccus pullicaecorum reduces feed conversion and protects from potentially harmful intestinal microorganisms and necrotic enteritis in broilers
- Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design
- 2015
- CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies
- Commensal microbiota influence systemic autoimmune responses
- Addition of acacia gum to a FOS/inulin blend improves its fermentation profile in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)
- Interindividual differences in response to treatment with butyrate-producing Butyricicoccus pullicaecorum 25–3T studied in an in vitro gut model
- 2014
- A20 controls intestinal homeostasis through cell-specific activities
- The skin microbiome of caspase-14-deficient mice shows mild dysbiosis
- Relationship between genome and epigenome - challenges and requirements for future research
- Relationship between genome and epigenome: challenges and requirements for future research
- 2013
- A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P-putida subspecies
- Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
- Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype
- 2012
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In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis
(2012) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 367(1595). p.1479-1488 Mark
- 2011
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
- 2006
- Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
- The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana
- An improved statistical method for detecting heterotachy in nucleotide sequences
- 2005
- GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
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Modeling gene and genome duplications in eukaryotes
(2005) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 102(15). p.5454-5459 Mark
- Functional divergence of proteins through frameshift mutations
- Small-scale gene duplications
- Deletions involving long-range conserved nongenic sequences upstream and downstream of FOXL2 as a novel disease-causing mechanism in Blepharophimosis syndrome
- 2004
- Duplication and divergence: the evolution of new genes and old ideas
- Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclins
- 2003
- And then there were many: MADS goes genomic
- Investigating ancient duplication events in the Arabidopsis genome
- Investigating ancient duplication events in the Arabidopsis genome
- Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants
- Genome-wide characterization of the lignification toolbox in Arabidopsis
- Power in numbers: in silico analysis of multigene families in Arabidopsis thaliana / Jeroen Raes.
- Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico
- 2002
- The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice
- Genome-wide analysis of core cell cycle genes in Arabidopsis
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Transcriptome analysis during cell division in plants
(2002) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 99(23). p.14825-14830 Mark