Ghent University Academic Bibliography

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- Journal Article
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Combined burden and functional impact tests for cancer driver discovery using DriverPower

Shimin Shuai, Steven Gallinger, Lincoln Stein, the PCAWG Drivers and Functional Interpretation Working Group, Kathleen Marchal (UGent) and Sergio Pulido-Tamayo

(2020) NATURE COMMUNICATIONS. 11(1).
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- Journal Article
- A1
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Integrative pathway enrichment analysis of multivariate omics data

Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Jüri Reimand, the PCAWG Drivers and Functional Interpretation Working Group, et al.

(2020) NATURE COMMUNICATIONS. 11(1).
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Pathway and network analysis of more than 2500 whole cancer genomes

Matthew A Reyna, David Haan, Marta Paczkowska, Lieven Verbeke (UGent) , Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, et al.

(2020) NATURE COMMUNICATIONS. 11(1).
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M Hess, Randi Istrup Juul, Ziao Lin, et al.

(2020) NATURE. 578(7793). p.102-111
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Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Joana Carlevaro-Fita, Andres Lanzos, Lars Feuerbach, Chen Hong, David Mas-Ponte, Jakob Skou Pedersen, Rory Johnson, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, et al.

(2020) COMMUNICATIONS BIOLOGY. 3(1).
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Pan-cancer analysis of whole genomes

Peter J. Campbell, Gad Getz, Jan O. Korbel, Joshua M. Stuart, Jennifer L. Jennings, Lincoln D. Stein, Marc D. Perry, Hardeep K. Nahal-Bose, B. F. Francis Ouellette, Constance H. Li, et al.

(2020) NATURE. 578(7793). p.82-93
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- Conference Paper
- C3
Identifying prokaryotic consortia that live in close interactions with algae

Assia Saltykova, Sergio Pulido-Tamayo, Marie Pazoutova, Stefan A Rensing, Tomoaki Nishiyama, Yves Van de Peer (UGent) , Kathleen Marchal (UGent) and Stephane Rombauts (UGent)

(2015) EUROPEAN JOURNAL OF PHYCOLOGY. 50(suppl. 1). p.145-146

Academic Bibliography

Combined burden and functional impact tests for cancer driver discovery using DriverPower

Integrative pathway enrichment analysis of multivariate omics data

Pathway and network analysis of more than 2500 whole cancer genomes

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Pan-cancer analysis of whole genomes

Identifying prokaryotic consortia that live in close interactions with algae

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