Ghent University Academic Bibliography

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Core genome sequencing analysis of E. coli O157 : H7 unravelling genetic relatedness among strains from cattle, beef, and humans in Bishoftu, Ethiopia

Fanta D. Gutema, Lieven De Zutter (UGent) , Denis Piérard, Bruno Hinckel, Hideo Imamura, Geertrui Rasschaert, Reta D. Abdi, Getahun E. Agga and Florence Crombé

(2023) MICROBIOLOGY RESEARCH. 14(1). p.148-160
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Stéphanie Nouws (UGent) , Bavo Verhaegen (UGent) , Sarah Denayer, Florence Crombé (UGent) , Denis Piérard (UGent) , Bert Bogaerts (UGent) , Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Identification of five serotypes of enteropathogenic Escherichia coli from diarrheic calves and healthy cattle in Belgium and comparative genomics with Shigatoxigenic e. coli

Audrey Habets, Fabrice Touzain, Pierrick Lucas, Nguyen Thi Thu Huong, Atsushi Iguchi, Florence Crombé, Nicolas Korsak, Denis Piérard, Marc Saulmont, Eric Cox (UGent) , et al.

(2022) VETERINARY SCIENCES. 9(9).
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Characterization of hypervirulent Klebsiella pneumoniae isolates in Belgium

Ahalieyah Anantharajah, Matthieu Deltombe, Marie de Barsy, Stephanie Evrard, Olivier Denis, Pierre Bogaerts, Marie Hallin, Veronique Yvette Miendje Deyi, Denis Pierard, Peggy Bruynseels, et al.

(2022) EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 41(5). p.859-865
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts (UGent) , Stéphanie Nouws (UGent) , Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand, Qiang Fu, Florence Crombé, Denis Piérard, Kathleen Marchal (UGent) , et al.

(2021) MICROBIAL GENOMICS. 7(3).
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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

Cédric Lood, Charlotte Peeters (UGent) , Quentin Lamy-Besnier, Jeroen Wagemans, Daniel De Vos, Marijke Proesmans, Jean-Paul Pirnay, Fedoua Echahidi, Denis Piérard, Matthieu Thimmesch, et al.

(2021) PLOS PATHOGENS. 17(3).
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen (UGent) , Kevin Vanneste (UGent) , Nancy H. C. Roosens, Denis Pierard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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Matrix-assisted laser desorption ionization–time of flight mass spectrometry for rapid detection of isolates belonging to the epidemic clones Achromobacter xylosoxidans ST137 and Achromobacter ruhlandii DES from cystic fibrosis patients

Thomas Garrigos, Manon Dollat, Arnaud Magallon, Angélique Chapuis, Véronique Varin, Julien Bador, Nadia Makki, Lise Cremet, Elise Persyn, Emilie Cardot-Martin, et al.

(2021) JOURNAL OF CLINICAL MICROBIOLOGY. 59(10).
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Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia Saltykova (UGent) , Florence Buytaers (UGent) , Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(16).
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A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) MICROORGANISMS. 8(8).

Academic Bibliography

Core genome sequencing analysis of E. coli O157 : H7 unravelling genetic relatedness among strains from cattle, beef, and humans in Bishoftu, Ethiopia

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Identification of five serotypes of enteropathogenic Escherichia coli from diarrheic calves and healthy cattle in Belgium and comparative genomics with Shigatoxigenic e. coli

Characterization of hypervirulent Klebsiella pneumoniae isolates in Belgium

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Matrix-assisted laser desorption ionization–time of flight mass spectrometry for rapid detection of isolates belonging to the epidemic clones Achromobacter xylosoxidans ST137 and Achromobacter ruhlandii DES from cystic fibrosis patients

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

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