Ghent University Academic Bibliography

Your filters: cql: author="Perez-Riverol, Yasset" or (type any "bookEditor issueEditor" and editor="Perez-Riverol, Y...

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BioSamples database : the global hub for sample metadata and multi-omics integration

Dipayan Gupta, Isuru Liyanage, Yasset Perez-Riverol, Enrique Sapena Ventura, Wei Kheng Teh, Tim Van Den Bossche (UGent) , Senthilnathan Vijayaraja, Amnon Khen, Ugis Sarkans, Tony Burdett, et al.

(2026) NUCLEIC ACIDS RESEARCH. 54(D1). p.D1761-D1767
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MzPeak : designing a scalable, interoperable, and future-ready mass spectrometry data format

Tim Van Den Bossche (UGent) , Theodore Alexandrov, Aivett Bilbao, Wout Bittremieux, Federico Ivan Brigante, Matthew Chase Chambers, Joshua Charkow, Eric Deutsch, Andrew W. Dowsey, Yasin El Abiead, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(11). p.5329-5335
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The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard‐Paulet, Yasset Perez‐Riverol, Veit Schwämmle, Julian Uszkoreit and Tim Van Den Bossche (UGent)

(2025) RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 39(S1).
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The proteomics standards initiative standardized formats for spectral libraries and fragment ion peak annotations : mzSpecLib and mzPAF

Joshua Klein, Henry Lam, Tytus D. Mak, Wout Bittremieux, Yasset Perez-Riverol, Ralf Gabriels (UGent) , Jim Shofstahl, Helge Hecht, Pierre-Alain Binz, Shin Kawano, et al.

(2024) ANALYTICAL CHEMISTRY. 96(46). p.18491-18501
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lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation

Tine Claeys (UGent) , Tim Van Den Bossche (UGent) , Yasset Perez-Riverol, Kris Gevaert (UGent) , Juan Antonio Vizcaíno and Lennart Martens (UGent)

(2023) NATURE COMMUNICATIONS. 14(1).
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ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Tobias G. Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric W. Deutsch

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.632-636
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Proteomics standards initiative at twenty years : current activities and future work

Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.287-301
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- Miscellaneous
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ProteomicsML : an online platform for community-curated datasets and tutorials for machine learning in proteomics

Tobias Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric Deutsch

(2022) ChemRxiv.
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A comprehensive evaluation of consensus spectrum generation methods in proteomics

Xiyang Luo, Wout Bittremieux, Johannes Griss, Eric W. Deutsch, Timo Sachsenberg, Lev I. Levitsky, Mark V. Ivanov, Julia A. Bubis, Ralf Gabriels (UGent) , Henry Webel, et al.

(2022) JOURNAL OF PROTEOME RESEARCH. 21(6). p.1566-1574
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Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1189-1195

Academic Bibliography

BioSamples database : the global hub for sample metadata and multi-omics integration

MzPeak : designing a scalable, interoperable, and future-ready mass spectrometry data format

The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS) : an open community for bioinformatics training and research

The proteomics standards initiative standardized formats for spectral libraries and fragment ion peak annotations : mzSpecLib and mzPAF

lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation

ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Proteomics standards initiative at twenty years : current activities and future work

ProteomicsML : an online platform for community-curated datasets and tutorials for machine learning in proteomics

A comprehensive evaluation of consensus spectrum generation methods in proteomics

Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

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