Ghent University Academic Bibliography

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Your filters: cql: author="Pattyn, Filip" or (type exact bookEditor and editor="Pattyn, Filip")

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Cost-based analysis of the impact of data completeness and representational consistency

Yoram Timmerman (UGent) , Rihem Nasfi (UGent) , Guy De Tré (UGent) , Filip Pattyn (UGent) and Antoon Bronselaer (UGent)

(2023) DECISION SUPPORT SYSTEMS. 175.
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Dynamic repair of categorical data with edit rules

Antoon Bronselaer (UGent) , Toon Boeckling (UGent) and Filip Pattyn (UGent)

(2022) EXPERT SYSTEMS WITH APPLICATIONS. 201.
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- Research Data
Cost-based analysis of the impact of data completeness and representational consistency

Yoram Timmerman (UGent) , Rihem Nasfi (UGent) , Guy De Tré (UGent) , Filip Pattyn (UGent) and Antoon Bronselaer (UGent)

(2021)
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Unravelling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

Sofie Lodens, Sophie Roelants (UGent) , Katarzyna Ciesielska (UGent) , Robin Geys (UGent) , Evelien Derynck, Karolien Maes, Filip Pattyn (UGent) , Lisa Van Renterghem, Léopold Mottet, Sven Dierickx (UGent) , et al.

(2020) BIOTECHNOLOGY AND BIOENGINEERING. 117(2). p.453-465
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Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR

Steve Lefever (UGent) , Ali Rihani (UGent) , Joni Van der Meulen (UGent) , Filip Pattyn (UGent) , Tom Van Maerken (UGent) , Jo Van Dorpe (UGent) , Jan Hellemans and Jo Vandesompele (UGent)

(2019) SCIENTIFIC REPORTS. 9.
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An ontology to standardize research output of nutritional epidemiology : from paper-based standards to linked content

Chen Yang, Henry Ambayo, Bernard De Baets (UGent) , Patrick Kolsteren (UGent) , Nattapon Thanintorn, Dana Hawwash, Jildau Bouwman, Antoon Bronselaer (UGent) , Filip Pattyn and Carl Lachat (UGent)

(2019) NUTRIENTS. 11(6).
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- C3
Unraveling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

Sofie Lodens, Sophie Roelants (UGent) , Katarzyna Ciesielska (UGent) , Robin Geys (UGent) , Evelien Derynck, Karolien Maes, Filip Pattyn (UGent) , Lisa Van Renterghem, Léopold Mottet, Sven Dierickx (UGent) , et al.

(2019) Biosurfactants, 1st International conference, Abstracts.
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High-throughput PCR assay design for targeted resequencing using primerXL

Steve Lefever (UGent) , Filip Pattyn (UGent) , Bram De Wilde (UGent) , Frauke Coppieters (UGent) , Sarah De Keulenaer (UGent) , Jan Hellemans and Jo Vandesompele (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Development and application of a molecular toolkit for the biosurfactant chassis organism Starmerella bombicola

Sofie Lodens, Sophie Roelants (UGent) , Katarzyna Ciesielska (UGent) , Robin Geys (UGent) , Pieter Coussement (UGent) , Filip Pattyn (UGent) , Stijn Verweire (UGent) , Lien Saey (UGent) , Karen Saerens (UGent) , Bart Devreese (UGent) , et al.

(2017) Yeast, 33rd International specialised symposium, Abstracts.
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Scaling out federated queries for life sciences data in production

Dieter De Witte (UGent) , Laurens De Vocht (UGent) , Filip Pattyn (UGent) , Hans Constandt (UGent) , Erik Mannens (UGent) and Ruben Verborgh (UGent)

(2016) SWAT4LS. p.1-10
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Big linked data ETL benchmark on cloud commodity hardware

Dieter De Witte (UGent) , Laurens De Vocht (UGent) , Ruben Verborgh (UGent) , Kenny Knecht, Filip Pattyn, Hans Constandt, Erik Mannens (UGent) and Rik Van de Walle (UGent)

(2016) Proceedings of the International Workshop on Semantic Big Data.
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Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

Miriam Bauwens (UGent) , Sarah De Jaegere (UGent) , Steve Lefever (UGent) , Barbara D'haene, Filip Pattyn, Lies Hoefsloot, Thomy de Ravel de l'Argentière, Bart Leroy (UGent) , Elfride De Baere (UGent) and Frauke Coppieters (UGent)

(2014) Translational genetics : from cage over bench to bed.
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Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

Miriam Bauwens (UGent) , Sarah De Jaegere (UGent) , Steve Lefever (UGent) , Barbara D'haene, Filip Pattyn, Lies Hoefsloot, Thomy de Ravel de l'Argentière, Bart Leroy (UGent) , Elfride De Baere (UGent) and Frauke Coppieters (UGent)

(2014) Novel Therapies for Inherited Retinal Dystrophies, Symposium abstracts.
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Single-nucleotide polymorphisms and other mismatches reduce performance of quantitative PCR assays

Steve Lefever (UGent) , Filip Pattyn (UGent) , Jan Hellemans and Jo Vandesompele (UGent)

(2013) CLINICAL CHEMISTRY. 59(10). p.1470-1480
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A dual approach for comprehensive genetic testing of ABCA4 in Stargardt disease

Miriam Bauwens (UGent) , Caroline Van Cauwenbergh (UGent) , Sarah De Jaegere (UGent) , Steve Lefever (UGent) , Barbara D'haene (UGent) , Filip Pattyn (UGent) , Bart Leroy (UGent) , Elfride De Baere (UGent) and Frauke Coppieters (UGent)

(2013) INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE. 54(15). p.3372-3372
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Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

Miriam Bauwens (UGent) , Sarah De Jaegere (UGent) , Steve Lefever (UGent) , Barbara D'haene, Filip Pattyn, Lies Hoefsloot, Thomy de Ravel de l'Argentière, Bart Leroy (UGent) , Elfride De Baere (UGent) and Frauke Coppieters (UGent)

(2013) International Society for Genetic Eye Diseases and Retinoblastoma, Meeting abstracts.
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A dual approach for comprehensive genetic testing of ABCA4 in Stargardt disease

Miriam Bauwens (UGent) , Caroline Van Cauwenbergh (UGent) , Sarah De Jaegere (UGent) , Steve Lefever (UGent) , Barbara D'haene (UGent) , Filip Pattyn (UGent) , Thomy de Ravel de l'Argentière, Bart Leroy (UGent) , Elfride De Baere (UGent) and Frauke Coppieters (UGent)

(2013) Belgian Society of Human Genetics, 13th Annual meeting, Abstracts.
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Effective Alu repeat based RT-qPCR normalization in cancer cell perturbation experiments

Ali Rihani (UGent) , Tom Van Maerken (UGent) , Filip Pattyn (UGent) , Gert Van Peer (UGent) , Anneleen Beckers (UGent) , Sara De Brouwer (UGent) , Candy Kumps (UGent) , Evelien Mets (UGent) , Joni Van der Meulen (UGent) , Pieter Rondou (UGent) , et al.

(2013) PLOS ONE. 8(8).
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MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma

Marco Lodrini, Ina Oehme, Christina Schroeder, Till Milde, Marie C Schier, Annette Kopp-Schneider, Johannes H Schulte, Matthias Fischer, Katleen De Preter (UGent) , Filip Pattyn (UGent) , et al.

(2013) NUCLEIC ACIDS RESEARCH. 41(12). p.6018-6033
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Focal DNA copy number changes in neuroblastoma target MYCN regulated genes

Candy Kumps (UGent) , Annelies Fieuw (UGent) , Pieter Mestdagh (UGent) , Björn Menten (UGent) , Steve Lefever (UGent) , Filip Pattyn (UGent) , Sara De Brouwer (UGent) , Tom Sante (UGent) , Johannes Hubertus Schulte, Alexander Schramm, et al.

(2013) PLOS ONE. 8(1).
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MYCN directly regulates long non-coding RNA expression in neuroblastoma

Pieter Mestdagh (UGent) , Johannes Schulte, Filip Pattyn (UGent) , Frank Westermann, Genevieve Laureys (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2012) ANR Toronto 2012, Abstracts.
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MiR-137 is epigenetically silenced in MYCN amplified neuroblastoma and targets the polycomb repressive complex 2 (PRC2) component EZH2

Anneleen Beckers (UGent) , Maté Ongenaert (UGent) , Anneleen Decock (UGent) , Candy Kumps (UGent) , Filip Pattyn (UGent) , Pieter Mestdagh (UGent) , Johannes H. Schulte, Franki Speleman (UGent) and Katleen De Preter (UGent)

(2012) OncoPoint.
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MiR-137 is epigenetically silenced in MYCN amplified neuroblastomas and targets the polycomb repressive complex 2 (PRC2) component EZH2

Anneleen Beckers (UGent) , Maté Ongenaert (UGent) , Anneleen Decock (UGent) , Candy Kumps (UGent) , Filip Pattyn (UGent) , the Neuroblastoma Research Consortium (NRC), Pieter Mestdagh (UGent) , Johannes H Schulte, Franki Speleman (UGent) and Katleen De Preter (UGent)

(2012) ANR Toronto 2012, Abstracts.
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Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma

Sara De Brouwer (UGent) , Pieter Mestdagh (UGent) , Irina Lambertz (UGent) , Filip Pattyn (UGent) , Anne De Paepe (UGent) , Frank Westermann, Christina Schroeder, Johannes H Schulte, Alexander Schramm, Katleen De Preter (UGent) , et al.

(2012) INTERNATIONAL JOURNAL OF CANCER. 130(11). p.2591-2598
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Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis

Frauke Coppieters (UGent) , Bram De Wilde (UGent) , Steve Lefever (UGent) , Ellen De Meester (UGent) , Nina De Rocker, Caroline Van Cauwenbergh (UGent) , Filip Pattyn (UGent) , Françoise Meire, Bart Leroy (UGent) , Jan Hellemans, et al.

(2012) GENETICS IN MEDICINE. 14(6). p.576-585
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Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

Sarah De Keulenaer (UGent) , Jan Hellemans, Steve Lefever (UGent) , Jean-Pierre Renard (UGent) , Joachim De Schrijver (UGent) , Hendrik Van de Voorde (UGent) , Mohammad Amin Tabatabaiefar, Filip Van Nieuwerburgh (UGent) , Daisy Flamez (UGent) , Filip Pattyn (UGent) , et al.

(2012) BMC MEDICAL GENOMICS. 5.
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Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas

Annelies Fieuw (UGent) , Candy Kumps (UGent) , Alexander Schramm, Filip Pattyn (UGent) , Björn Menten (UGent) , Francesca Antonacci, Peter Sudmant, Johannes H Schulte, Nadine Van Roy (UGent) , Sarah Vergult (UGent) , et al.

(2012) INTERNATIONAL JOURNAL OF CANCER. 130(11). p.2599-2606
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Targeted expression of mutated ALK induces neuroblastoma in transgenic mice

Lukas C Heukamp, Theresa Thor, Alexander Schramm, Katleen De Preter (UGent) , Candy Kumps (UGent) , Bram De Wilde (UGent) , Andrea Odersky, Martin Peifer, Sven Lindner, Annika Spruessel, et al.

(2012) SCIENCE TRANSLATIONAL MEDICINE. 4(141).
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The microRNA body map : dissecting microRNA function through integrative genomics

Pieter Mestdagh (UGent) , Steve Lefever (UGent) , Filip Pattyn (UGent) , Dana Ridzon, Erik Fredlund, Annelies Fieuw (UGent) , Maté Ongenaert (UGent) , Joëlle Vermeulen (UGent) , Anne De Paepe (UGent) , Linda Wong, et al.

(2011) NUCLEIC ACIDS RESEARCH. 39(20).
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Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

Kim De Leeneer (UGent) , Joachim De Schrijver (UGent) , Lieven Clement (UGent) , Machteld Baetens (UGent) , Steve Lefever (UGent) , Sarah De Keulenaer (UGent) , Wim Van Criekinge (UGent) , Dieter Deforce (UGent) , Filip Van Nieuwerburgh (UGent) , Sofie Bekaert (UGent) , et al.

(2011) PLOS ONE. 6(9).
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methGraph: A genome visualization tool for PCR-based methylation assays

Steve Lefever (UGent) , Jasmien Hoebeeck (UGent) , Filip Pattyn (UGent) , Gábor Tusnády, Anne De Paepe (UGent) , Franki Speleman (UGent) , Tamás Arányi and Jo Vandesompele (UGent)

(2010) EPIGENETICS. 5(2). p.159-163
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The miRNA body map: dissecting miRNA function through integrative genomics

Pieter Mestdagh (UGent) , Steve Lefever (UGent) , Filip Pattyn (UGent) , Dana Ridzon, Erik Fredlund, Annelies Fieuw (UGent) , Joëlle Vermeulen (UGent) , Anne De Paepe (UGent) , Linda Wong, Franki Speleman (UGent) , et al.

(2010) MicroRNAs Europe, Meeting abstracts.
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Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

Joachim De Schrijver (UGent) , Kim De Leeneer (UGent) , Steve Lefever (UGent) , Nick Sabbe (UGent) , Filip Pattyn (UGent) , Filip Van Nieuwerburgh (UGent) , Paul Coucke (UGent) , Dieter Deforce (UGent) , Jo Vandesompele (UGent) , Sofie Bekaert (UGent) , et al.

(2010) BMC BIOINFORMATICS. 11.
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MYCN/c-MYC-induced microRNAs repress coding gene networks associated with poor outcome in MYCN/c-MYC-activated tumors

Pieter Mestdagh (UGent) , E Fredlund, Filip Pattyn (UGent) , JH Schulte, D Muth, Joëlle Vermeulen (UGent) , Candy Kumps (UGent) , S Schlierf, Katleen De Preter (UGent) , Nadine Van Roy (UGent) , et al.

(2010) ONCOGENE. 29(9). p.1394-1404
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An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours

Pieter Mestdagh (UGent) , Erik Fredlund, Filip Pattyn (UGent) , Ali Rihani (UGent) , Tom Van Maerken (UGent) , Joëlle Vermeulen (UGent) , Candy Kumps (UGent) , Björn Menten (UGent) , Katleen De Preter (UGent) , Alexander Schramm, et al.

(2010) Advances in Genomics symposium, Abstracts.
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An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours

Pieter Mestdagh (UGent) , E Fredlund, Filip Pattyn (UGent) , Ali Rihani (UGent) , Tom Van Maerken (UGent) , Joëlle Vermeulen (UGent) , Candy Kumps (UGent) , Björn Menten (UGent) , Katleen De Preter (UGent) , A Schramm, et al.

(2010) ONCOGENE. 29(24). p.3583-3592
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RTPrimerDB : the portal for real-time PCR primers and probes

Steve Lefever (UGent) , Jo Vandesompele (UGent) , Franki Speleman (UGent) and Filip Pattyn (UGent)

(2009) NUCLEIC ACIDS RESEARCH. 37. p.D942-D945
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Meta-mining of Neuroblastoma and Neuroblast Gene Expression Profiles Reveals Candidate Therapeutic Compounds

Katleen De Preter (UGent) , Sara De Brouwer (UGent) , Tom Van Maerken (UGent) , Filip Pattyn (UGent) , A Schramm, A Eggert, Jo Vandesompele (UGent) and Franki Speleman (UGent)

(2009) CLINICAL CANCER RESEARCH. 15(11). p.3690-3696
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RDML : structured language and reporting guidelines for real-time quantitative PCR data

Steve Lefever (UGent) , Jan Hellemans, Filip Pattyn (UGent) , Daniel R Przybylski, Chris Taylor, René Geurts, Andreas Untergasser and Jo Vandesompele (UGent)

(2009) NUCLEIC ACIDS RESEARCH. 37(7). p.2065-2069
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The emerging molecular pathogenesis of neuroblastoma : implications for improved risk assessment and targeted therapy

Nadine Van Roy (UGent) , Katleen De Preter (UGent) , Jasmien Hoebeeck (UGent) , Tom Van Maerken (UGent) , Filip Pattyn (UGent) , Pieter Mestdagh (UGent) , Joëlle Vermeulen (UGent) , Jo Vandesompele (UGent) and Franki Speleman (UGent)

(2009) GENOME MEDICINE. 1(7).
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- A4
Gebruik van genexpresieanalyse in de aanpak van neuroblastoom bij kinderen

Joëlle Vermeulen (UGent) , Katleen De Preter (UGent) , Pieter Mestdagh (UGent) , Filip Pattyn (UGent) , Anne De Paepe (UGent) , Nadine Van Roy (UGent) , Genevieve Laureys (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2009) ONCO (NEDERLANDSE ED.). 3(6). p.209-215
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- A2
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Using real-time qPCR to evaluate RNAi-mediated gene silencing

Tom Van Maerken (UGent) , Pieter Mestdagh (UGent) , S De Clercq, Filip Pattyn (UGent) , Nurten Yigit (UGent) , Anne De Paepe (UGent) , J C Marine, Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2009) BioTechniques Protocol Guide.
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External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data

Joëlle Vermeulen (UGent) , Filip Pattyn (UGent) , Katleen De Preter (UGent) , Liesbeth Vercruysse (UGent) , Stefaan Derveaux (UGent) , Pieter Mestdagh (UGent) , Steve Lefever (UGent) , Jan Hellemans, Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2009) NUCLEIC ACIDS RESEARCH. 37(21).
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RNA pre-amplification enables large-scale RT-qPCR gene-expression studies on limiting sample amounts

Joëlle Vermeulen (UGent) , Stefaan Derveaux (UGent) , Steve Lefever (UGent) , Els De Smet (UGent) , Katleen De Preter (UGent) , Nurten Yigit (UGent) , Anne De Paepe (UGent) , Filip Pattyn (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2009) BMC RESEARCH NOTES. 2.
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Aberrant methylation of candidate tumor suppressor genes in neuroblastoma

Jasmien Hoebeeck (UGent) , Evi Michels (UGent) , Filip Pattyn (UGent) , Valerie Combaret, Joelle Vermeulen, Nurten Yigit (UGent) , Claire Hoyoux, Genevieve Laureys (UGent) , Anne De Paepe (UGent) , Franki Speleman (UGent) , et al.

(2009) CANCER LETTERS. 273(2). p.336-346
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- Miscellaneous
Mapping of 5q35 chromosomal rearrangements within a genomically unstable region (vol 45, pg 672, 2008)

Karen Buysse (UGent) , A Crepel, Björn Menten (UGent) , Filip Pattyn (UGent) , F Antonacci, JA Veltman, LA Larsen, Z Tumer, A de Klein, I van de Laar, et al.

(2009) JOURNAL OF MEDICAL GENETICS. 46(12). p.861-861
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Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening

Barbara D'haene (UGent) , C Attanasio, DIANE BEYSEN (UGent) , J Dostie, E Lemire, P Bouchard, M Field, K Jones, B Lorenz, Björn Menten (UGent) , et al.

(2009) PLOS GENETICS. 5(6).
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- Conference Paper
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Expression profiling of a new class of non-coding RNAs in human neuroblastoma

Pieter Mestdagh (UGent) , Filip Pattyn (UGent) , Katleen De Preter (UGent) , Joëlle Vermeulen (UGent) , Anne De Paepe (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2008) ANR Chiba 2008, Abstracts.
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MYCN regulates oncogenic and tumour suppressor miRNA networks in neuroblastoma

Pieter Mestdagh (UGent) , Joëlle Vermeulen (UGent) , Filip Pattyn (UGent) , Liesbeth Vercruysse, Anne De Paepe (UGent) , Genevieve Laureys (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2008) ANR Chiba 2008, Abstracts.
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Real-time qPCR as a tool for evaluating RNAi-mediated gene silencing

Tom Van Maerken (UGent) , Pieter Mestdagh (UGent) , Sarah De Clercq (UGent) , Filip Pattyn (UGent) , Nurten Yigit (UGent) , Anne De Paepe (UGent) , Jean-Christophe Marine (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2008) Bioradiations. 124. p.16-21
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High throughput stem-loop RT-PCR miRNA expression profiling using minute amounts of input RNA reveals new insights in neuroblastoma pathogenesis

Pieter Mestdagh (UGent) , Joëlle Vermeulen (UGent) , Katleen De Preter (UGent) , Filip Pattyn (UGent) , Genevieve Laureys (UGent) , Rosa Noguera, Marta Piqueras, Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2008) miRNAs in Health and Disease, Abstracts.
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Unmasking of epigenetically silenced microRNAs in neuroblastoma

Jasmien Hoebeeck (UGent) , Geert Declerck (UGent) , Pieter Mestdagh (UGent) , Filip Pattyn (UGent) , Katleen De Preter (UGent) , Joëlle Vermeulen (UGent) , Nurten Yigit (UGent) , Anne De Paepe (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2008) CELLULAR ONCOLOGY. 30(3). p.258-259
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Mapping of 5q35 chromosomal rearrangements within a genomically unstable region

Karen Buysse (UGent) , A CREPEL, Björn Menten (UGent) , Filip Pattyn (UGent) , F ANTONACCI, J VELTMAN, L LARSEN, Z TüMER, A DE KLEIN, I VAN DE LAAR, et al.

(2008) Journal of Medical Genetics. 45(10). p.672-678
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Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas

F Westermann, D Muth, A Benner, T Bauer, KO Henrich, A Oberthuer, B Brors, T Beissbarth, Jo Vandesompele (UGent) , Filip Pattyn (UGent) , et al.

(2008) GENOME BIOLOGY. 9(10).
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Real-time PCR quality control for gene expression profiling on the LightCycler 480 System

Jasmien Hoebeeck (UGent) , Filip Pattyn (UGent) , Y NURTEN, E DE SMET, Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2007) Biochemica. 2.
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Integrative genomics in neuroblastoma research

Franki Speleman (UGent) , Katleen De Preter (UGent) , Evi Michels (UGent) , Jasmien Hoebeeck (UGent) , Filip Pattyn (UGent) , Joëlle Vermeulen (UGent) , Nadine Van Roy (UGent) , Anne De Paepe (UGent) , Genevieve Laureys (UGent) and Jo Vandesompele (UGent)

(2007) CHROMOSOME RESEARCH. 15(suppl. 1). p.8-9
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- PhD Thesis
Identification of MYCN transcriptional target genes in neuroblastoma

Filip Pattyn (UGent)

(2006)
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RTPrimerDB : the real-time PCR primer and probe database, major update 2006

Filip Pattyn (UGent) , Piet Robbrecht, Anne De Paepe (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2006) NUCLEIC ACIDS RESEARCH. 34. p.D684-D688
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MethBLAST and methPrimerDB: web-tools for PCR based methylation analysis

Filip Pattyn (UGent) , Jasmien Hoebeeck (UGent) , Piet Robbrecht, Evi Michels (UGent) , Anne De Paepe (UGent) , G BOTTU, D COORNAERT, R HERZOG, Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2006) BMC BIOINFORMATICS. 7.
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arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

Björn Menten (UGent) , Filip Pattyn (UGent) , Katleen De Preter (UGent) , Piet Robbrecht, Evi Michels (UGent) , Karen Buysse (UGent) , Geert Mortier (UGent) , Anne De Paepe (UGent) , Steven van Vooren, Joris Vermeesch, et al.

(2005) BMC BIOINFORMATICS. 6.
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Neuroblastoma cells with overexpressed MYCN retain their capacity to undergo neuronal differentiation

A EDSJO, H NILSSON, Jo Vandesompele (UGent) , J KARLSSON, Filip Pattyn (UGent) , LA CULP, Franki Speleman (UGent) and S PAHLMAN

(2004) LABORATORY INVESTIGATION. 84(4). p.406-417
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- Journal Article
- A1
- open access
Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons

Katleen De Preter (UGent) , Filip Pattyn (UGent) , Geert Berx (UGent) , Kristin Strumane, Björn Menten (UGent) , Frans Van Roy (UGent) , Anne De Paepe (UGent) , Franki Speleman (UGent) and Jo Vandesompele (UGent)

(2004) BMC GENOMICS. 5.
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RTPrimerDB : the Real-Time PCR primer and probe database

Filip Pattyn (UGent) , Franki Speleman (UGent) , Anne De Paepe (UGent) and Jo Vandesompele (UGent)

(2003) NUCLEIC ACIDS RESEARCH. 31(1). p.122-123
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- Conference Paper
- C3
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More than 125 FOXL2 mutations and variants in BPES and POF patients in the human FOXL2 allelic variant database

DIANE BEYSEN (UGent) , Jo Vandesompele (UGent) , Filip Pattyn (UGent) , Anne De Paepe (UGent) , Ludwine Messiaen and Elfride De Baere (UGent)

(2003) AMERICAN JOURNAL OF HUMAN GENETICS. 73(5). p.561-561
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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Jo Vandesompele (UGent) , Katleen De Preter (UGent) , Filip Pattyn (UGent) , Bruce Poppe (UGent) , Nadine Van Roy (UGent) , Anne De Paepe (UGent) and Franki Speleman (UGent)

(2002) GENOME BIOLOGY. 3(7).

Cost-based analysis of the impact of data completeness and representational consistency

Dynamic repair of categorical data with edit rules

Cost-based analysis of the impact of data completeness and representational consistency

Unravelling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR

An ontology to standardize research output of nutritional epidemiology : from paper-based standards to linked content

Unraveling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

High-throughput PCR assay design for targeted resequencing using primerXL

Development and application of a molecular toolkit for the biosurfactant chassis organism Starmerella bombicola

Scaling out federated queries for life sciences data in production

Big linked data ETL benchmark on cloud commodity hardware

Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

Single-nucleotide polymorphisms and other mismatches reduce performance of quantitative PCR assays

A dual approach for comprehensive genetic testing of ABCA4 in Stargardt disease

Copy number analysis of ABCA4 in Belgian patients with Stargardt reveals exon 20-22 deletion

A dual approach for comprehensive genetic testing of ABCA4 in Stargardt disease

Effective Alu repeat based RT-qPCR normalization in cancer cell perturbation experiments

MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma

Focal DNA copy number changes in neuroblastoma target MYCN regulated genes

MYCN directly regulates long non-coding RNA expression in neuroblastoma

MiR-137 is epigenetically silenced in MYCN amplified neuroblastoma and targets the polycomb repressive complex 2 (PRC2) component EZH2

MiR-137 is epigenetically silenced in MYCN amplified neuroblastomas and targets the polycomb repressive complex 2 (PRC2) component EZH2

Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma

Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis

Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas

Targeted expression of mutated ALK induces neuroblastoma in transgenic mice

The microRNA body map : dissecting microRNA function through integrative genomics

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

methGraph: A genome visualization tool for PCR-based methylation assays

The miRNA body map: dissecting miRNA function through integrative genomics

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

MYCN/c-MYC-induced microRNAs repress coding gene networks associated with poor outcome in MYCN/c-MYC-activated tumors

An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours

An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours

RTPrimerDB : the portal for real-time PCR primers and probes

Meta-mining of Neuroblastoma and Neuroblast Gene Expression Profiles Reveals Candidate Therapeutic Compounds

RDML : structured language and reporting guidelines for real-time quantitative PCR data

The emerging molecular pathogenesis of neuroblastoma : implications for improved risk assessment and targeted therapy

Gebruik van genexpresieanalyse in de aanpak van neuroblastoom bij kinderen

Using real-time qPCR to evaluate RNAi-mediated gene silencing

External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data

RNA pre-amplification enables large-scale RT-qPCR gene-expression studies on limiting sample amounts

Aberrant methylation of candidate tumor suppressor genes in neuroblastoma

Mapping of 5q35 chromosomal rearrangements within a genomically unstable region (vol 45, pg 672, 2008)

Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening

Expression profiling of a new class of non-coding RNAs in human neuroblastoma

MYCN regulates oncogenic and tumour suppressor miRNA networks in neuroblastoma

Real-time qPCR as a tool for evaluating RNAi-mediated gene silencing

High throughput stem-loop RT-PCR miRNA expression profiling using minute amounts of input RNA reveals new insights in neuroblastoma pathogenesis

Unmasking of epigenetically silenced microRNAs in neuroblastoma

Mapping of 5q35 chromosomal rearrangements within a genomically unstable region

Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas

Real-time PCR quality control for gene expression profiling on the LightCycler 480 System

Integrative genomics in neuroblastoma research

Identification of MYCN transcriptional target genes in neuroblastoma

RTPrimerDB : the real-time PCR primer and probe database, major update 2006

MethBLAST and methPrimerDB: web-tools for PCR based methylation analysis

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

Neuroblastoma cells with overexpressed MYCN retain their capacity to undergo neuronal differentiation

Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons

RTPrimerDB : the Real-Time PCR primer and probe database

More than 125 FOXL2 mutations and variants in BPES and POF patients in the human FOXL2 allelic variant database

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes