Ghent University Academic Bibliography

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The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

Mohamed Fares, Engy K. Tharwat, Ilse Cleenwerck (UGent) , Pieter Monsieurs, Rob Van Houdt, Peter Vandamme (UGent) , Mohamed El-Hadidi and Mohamed Mysara

(2025) ENVIRONMENTAL MICROBIOME. 20(1).
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Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

Gleb Goussarov, Mohamed Mysara, Ilse Cleenwerck (UGent) , Jürgen Claesen, Natalie Leys, Peter Vandamme (UGent) and Rob Van Houdt

(2024) MICROBIOLOGY. 170(6).
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Meta-analysis of RNA-seq datasets identifies novel players in glioblastoma

Magy Sallam, Mohamed Mysara, Sarah Baatout (UGent) , Pieter-Jan Guns, Raghda Ramadan and Mohammed Abderrafi Benotmane

(2022) CANCERS. 14(23).
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Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics

Gleb Goussarov, Jürgen Claesen, Mohamed Mysara, Ilse Cleenwerck (UGent) , Natalie Leys, Peter Vandamme (UGent) and Rob Van Houdt

(2022) ENVIRON MICROBIOME. 17(1).
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DNA methylation alterations in fractionally irradiated rats and breast cancer patients receiving radiotherapy

Magy Sallam, Mohamed Mysara, Mohammed Abderrafi Benotmane, Anne P. G. Crijns, Daan Spoor, Filip Van Nieuwerburgh (UGent) , Dieter Deforce (UGent) , Sarah Baatout (UGent) , Pieter-Jan Guns, An Aerts, et al.

(2022) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 23(24).
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Intestinal mucositis precedes dysbiosis in a mouse model for pelvic irradiation

Charlotte Segers, Mohamed Mysara, Jürgen Claesen, Sarah Baatout (UGent) , Natalie Leys, Sarah Lebeer, Mieke Verslegers and Felice Mastroleo

(2021) ISME COMMUNICATIONS. 1.
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Genetic responses of metabolically active limnospira indica strain PCC 8005 exposed to gamma-radiation during its lifecycle

Anu Yadav, Laurens Maertens, Tim Meese, Filip Van Nieuwerburgh (UGent) , Mohamed Mysara, Natalie Leys, Ann Cuypers and Paul Jaak Janssen

(2021) MICROORGANISMS. 9(8).
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X-irradiation induces acute and early term inflammatory responses in atherosclerosis-prone ApoE-/- mice and in endothelial cells

Raghda Ramadan, Michaël Claessens, Ellen Cocquyt (UGent) , Mohamed Mysara, Elke Decrock (UGent) , Sarah Baatout (UGent) , An Aerts and Luc Leybaert (UGent)

(2021) MOLECULAR MEDICINE REPORTS. 23(6).
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Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor

Valerie Van Eesbeeck, Ruben Props (UGent) , Mohamed Mysara, Pauline C. M. Petit, Corinne Rivasseau, Jean Armengaud, Pieter Monsieurs, Jacques Mahillon and Natalie Leys

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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Soil microbial community structure and functionality changes in response to long-term metal and radionuclide pollution

Tom Rogiers, Jurgen Claesen, Axel Van Gompel, Nathalie Vanhoudt, Mohamed Mysara, Adam Williamson (UGent) , Natalie Leys, Rob Van Houdt, Nico Boon (UGent) and Kristel Mijnendonckx

(2021) ENVIRONMENTAL MICROBIOLOGY. 23(3). p.1670-1683

Academic Bibliography

The unresolved struggle of 16S rRNA amplicon sequencing : a benchmarking analysis of clustering and denoising methods

Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

Meta-analysis of RNA-seq datasets identifies novel players in glioblastoma

Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics

DNA methylation alterations in fractionally irradiated rats and breast cancer patients receiving radiotherapy

Intestinal mucositis precedes dysbiosis in a mouse model for pelvic irradiation

Genetic responses of metabolically active limnospira indica strain PCC 8005 exposed to gamma-radiation during its lifecycle

X-irradiation induces acute and early term inflammatory responses in atherosclerosis-prone ApoE-/- mice and in endothelial cells

Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor

Soil microbial community structure and functionality changes in response to long-term metal and radionuclide pollution

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