Ghent University Academic Bibliography

Your filters: cql: author="Muth, Thilo" or (type any "bookEditor issueEditor" and editor="Muth, Thilo")

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- Journal Article
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The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2026) JOURNAL OF PROTEOME RESEARCH. 25(4). p.1831-1845
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- Miscellaneous
Metaproteomics beyond databases : addressing the challenges and potentials of de novo sequencing

Tim Van Den Bossche (UGent) , Denis Beslic, Sam van Puyenbroeck (UGent) , Tomi Suomi, Tanja Holstein (UGent) , Lennart Martens (UGent) , Laura L. Elo and Thilo Muth

(2025) PROTEOMICS. 25(17-18). p.51-61
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Bioinformatic workflows for metaproteomics

Tanja Holstein (UGent) and Thilo Muth

(2024) Metaproteomics : methods and protocols. In Methods in molecular biology (MIMB) 2820. p.187-213
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The Peptonizer2000 : graphical model based taxonomic identifications of metaproteomic samples

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) and Thilo Muth

(2024) BIORXIV.
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- Miscellaneous
The Peptonizer2000 : bringing confidence to metaproteomics

Tanja Holstein (UGent) , Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Simon Van de Vyver (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Thilo Muth

(2024) bioRxiv.
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PepGM : a probabilistic graphical model for taxonomic inference of viral proteome samples with associated confidence scores

Tanja Holstein (UGent) , Franziska Kistner, Lennart Martens (UGent) and Thilo Muth

(2023) BIOINFORMATICS. 39(5).
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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Tim Van Den Bossche (UGent) , Magnus Ø. Arntzen, Dörte Becher, Dirk Benndorf, Vincent G. H. Eijsink, Céline Henry, Pratik D. Jagtap, Nico Jehmlich, Catherine Juste, Benoit J. Kunath, et al.

(2021) MICROBIOME. 9(1).
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Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) BIORXIV.
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gNOMO : a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms (vol 2, 10.1093/nargab/lqaa058, 2020)

Maria Munoz-Benavent, Felix Hartkopf, Tim Van Den Bossche (UGent) , Vitor C. Piro, Carlos Garcia-Ferris, Amparo Latorre, Bernhard Y. Renard and Thilo Muth

(2020) NAR GENOMICS AND BIOINFORMATICS. 2(4).

Academic Bibliography

The Peptonizer2000 : bringing confidence to metaproteomics

Metaproteomics beyond databases : addressing the challenges and potentials of de novo sequencing

Bioinformatic workflows for metaproteomics

The Peptonizer2000 : graphical model based taxonomic identifications of metaproteomic samples

The Peptonizer2000 : bringing confidence to metaproteomics

PepGM : a probabilistic graphical model for taxonomic inference of viral proteome samples with associated confidence scores

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

gNOMO : a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms (vol 2, 10.1093/nargab/lqaa058, 2020)

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