Ghent University Academic Bibliography

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Maximal acyclic subgraph optimization for gene regulatory networks

Kenneth Stoop (UGent) , Tom Michoel (UGent) , Vanessa Vermeirssen (UGent) , Mario Pickavet (UGent) , P. Audenaert (UGent) and Didier Colle (UGent)

(2022) ORBEL 36 : 36th annual conference of the Belgian Operational Research Society, Book of abstracts. p.73-74
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- Journal Article
- A1
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High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Lingfei Wang, P. Audenaert (UGent) and Tom Michoel (UGent)

(2019) FRONTIERS IN GENETICS. 10.
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An algorithm to automatically generate the combinatorial orbit counting equations

Ine Melckenbeeck, P. Audenaert (UGent) , Tom Michoel, Didier Colle (UGent) and Mario Pickavet (UGent)

(2016) PLOS ONE. 11(1).
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The index-based subgraph matching algorithm with general symmetries (ISMAGS): exploiting symmetry for faster subgraph enumeration

Maarten Houbraken (UGent) , Sofie Demeyer (UGent) , Tom Michoel (UGent) , P. Audenaert (UGent) , Didier Colle (UGent) and Mario Pickavet (UGent)

(2014) PLOS ONE. 9(5).
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The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search trees

Sofie Demeyer (UGent) , Tom Michoel, Jan Fostier (UGent) , P. Audenaert (UGent) , Mario Pickavet (UGent) and Piet Demeester (UGent)

(2013) PLOS ONE. 8(4).
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Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants

Rahul Bhosale (UGent) , Jeremy B Jewell, Jens Hollunder (UGent) , Abraham JK Koo, Marnik Vuylsteke (UGent) , Tom Michoel (UGent) , Pierre Hilson (UGent) , Alain Goossens (UGent) , Gregg A Howe, John Browse, et al.

(2013) PLANT CELL. 25(8). p.2865-2877
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MotifSuite: workflow for probabilistic motif detection and assessment

Marleen Claeys, Valerie Storms, Hong Sun, Tom Michoel and Kathleen Marchal (UGent)

(2012) BIOINFORMATICS. 28(14). p.1931-1932
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Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

Anagha Joshi, Yves Van de Peer (UGent) and Tom Michoel

(2011) NUCLEIC ACIDS RESEARCH. 39(21). p.9108-9117
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Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks

Tom Michoel, Anagha Joshi, Bruno Nachtergaele and Yves Van de Peer (UGent)

(2011) MOLECULAR BIOSYSTEMS. 7(10). p.2769-2778
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CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

P. Audenaert (UGent) , Thomas Van Parys (UGent) , Florian Brondel (UGent) , Mario Pickavet (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Tom Michoel (UGent)

(2011) BIOINFORMATICS. 27(11). p.1587-1588

Academic Bibliography

Maximal acyclic subgraph optimization for gene regulatory networks

High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

An algorithm to automatically generate the combinatorial orbit counting equations

The index-based subgraph matching algorithm with general symmetries (ISMAGS): exploiting symmetry for faster subgraph enumeration

The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search trees

Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants

MotifSuite: workflow for probabilistic motif detection and assessment

Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

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