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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
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Whole slide imaging-based prediction of TP53 mutations identifies an aggressive disease phenotype in prostate cancer
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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
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Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices
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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
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Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii
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Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (vol 52, pg 331, 2020)
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Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance
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Competitive interactions facilitate resistance development against antimicrobials
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Halvade somatic : somatic variant calling with Apache Spark
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- Miscellaneous
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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
(2022) -
Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress
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OMEN : network-based driver gene identification using mutual exclusivity
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Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence
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BLSSpeller to discover novel regulatory motifs in maize