Ghent University Academic Bibliography

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Evolutionary trails of plant steroid genes

Cécile Vriet, Karen Lemmens, Klaas Vandepoele (UGent) , Christophe Reuzeau and Eugenia Russinova (UGent)

(2015) TRENDS IN PLANT SCIENCE. 20(5). p.301-308
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- Book Chapter
Directed module detection in a large-scale expression compendium

Qiang Fu, Karen Lemmens, Aminael Sánchez-Rodríguez, Inge M Thijs, Pieter Meysman, Hong Sun, Ana Carolina Fierro, Kristof Engelen and Kathleen Marchal (UGent)

(2012) Bacterial molecular networks : methods and protocols. In Methods in Molecular Biology 804. p.131-165
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- Journal Article
- A1
- open access
COLOMBOS : access port for cross-platform bacterial expression compendia

Kristof Engelen, Qiang Fu, Pieter Meysman, Aminael Sánchez-Rodríguez, Riet De Smet (UGent) , Karen Lemmens, Ana Carolina Fierro and Kathleen Marchal (UGent)

(2011) PLOS ONE. 6(7).
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- Book Chapter
Systems microbiology : gaining insights in transcriptional networks

Riet De Smet, Karen Lemmens, Ana Carolina Fierro and Kathleen Marchal (UGent)

(2010) Infectious disease informatics. p.93-122
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- Conference Paper
- P1
Layout and post-processing of transcriptional modules

Hong Sun, Tim Van den Bulcke, Bart De Moor, Karen Lemmens, Kristof Engelen and Kathleen Marchal (UGent)

(2009) 2009 International joint conference on bioinformatics, systems biology and intelligent computing, Proceedings. p.116-121
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ViTraM: visualization of transcriptional modules

Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen, Bart De Moor and Kathleen Marchal (UGent)

(2009) BIOINFORMATICS. 25(18). p.2450-2451
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- Journal Article
- A1
- open access
Inferring the transcriptional network of Bacillus subtilis

Abeer Fadda, Ana Carolina Fierro, Karen Lemmens, Pieter Monsieurs, Kristof Engelen and Kathleen Marchal (UGent)

(2009) MOLECULAR BIOSYSTEMS. 5(12). p.1840-1852
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The condition-dependent transcriptional network in Escherichia coli

Karen Lemmens, Tijl De Bie (UGent) , Thomas Dhollander, Pieter Monsieurs, Bart De Moor, Julio Collado-Vides, Kristof Engelen and Kathleen Marchal (UGent)

(2009) Annals of the New York Academy of Sciences. 1158. p.29-35
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- Journal Article
- A1
- open access
ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules

Hong Sun, Tijl De Bie (UGent) , Valerie Storms, Qiang Fu, Thomas Dhollander, Karen Lemmens, Annemieke Verstuyf, Bart De Moor and Kathleen Marchal (UGent)

(2009) BMC BIOINFORMATICS. 10(suppl. 1).
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- Journal Article
- A1
- open access
DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

Karen Lemmens, Tijl De Bie (UGent) , Thomas Dhollander, Sigrid CJ De Keersmaecker, Inge M Thijs, Geert Schoofs, Ami De Weerdt, Bart De Moor, Jos Vanderleyden, Julio Collado-Vides, et al.

(2009) GENOME BIOLOGY. 10(3).

Academic Bibliography

Evolutionary trails of plant steroid genes

Directed module detection in a large-scale expression compendium

COLOMBOS : access port for cross-platform bacterial expression compendia

Systems microbiology : gaining insights in transcriptional networks

Layout and post-processing of transcriptional modules

ViTraM: visualization of transcriptional modules

Inferring the transcriptional network of Bacillus subtilis

The condition-dependent transcriptional network in Escherichia coli

ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

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