Ghent University Academic Bibliography

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- Miscellaneous
Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298
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- Miscellaneous
Human proteome project mass spectrometry data interpretation guidelines 2.1

Eric W Deutsch, Christopher M Overall, Jennifer E Van Eyk, Mark S Baker, Young-Ki Paik, Susan T Weintraub, Lydie Lane, Lennart Martens (UGent) , Yves Vandenbrouck, Ulrike Kusebauch, et al.

(2016) JOURNAL OF PROTEOME RESEARCH. 15(11). p.3961-3970
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Juan A Vizcaino, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, et al.

(2014) NATURE BIOTECHNOLOGY. 32(3). p.223-226
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qcML: an exchange format for quality control metrics from mass spectrometry experiments

Mathias Walzer, Lucia Espona Pernas, Sara Nasso, Wout Bittremieux, Sven Nahnsen, Pieter Kelchtermans (UGent) , Peter Pichler, Henk WP van den Toorn, An Staes (UGent) , Jonathan Vandenbussche (UGent) , et al.

(2014) MOLECULAR & CELLULAR PROTEOMICS. 13(8). p.1905-1913
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Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report

Yasset Perez-Riverol, Henning Hermjakob, Oliver Kohlbacher, Lennart Martens (UGent) , David Creasy, Jürgen Cox, Felipe Leprevost, Baozhen Paul Shan, Violeta I Pérez-Nueno, Michal Blazejczyk, et al.

(2013) JOURNAL OF PROTEOMICS. 87. p.134-138
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PRIDE Inspector: a tool to visualize and validate MS proteomics data

Rui Wang, Antonio Fabregat, Daniel Ríos, David Ovelleiro, Joseph M Foster, Richard G Côté, Johannes Griss, Attila Csordas, Yasset Perez-Riverol, Florian Reisinger, et al.

(2012) NATURE BIOTECHNOLOGY. 30(2). p.135-137
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The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

Richard G Côté, Johannes Griss, José A Dianes, Rui Wang, James C Wright, Henk WP van den Toorn, Bas van Breukelen, Albert JR Heck, Niels Hulstaert (UGent) , Lennart Martens (UGent) , et al.

(2012) MOLECULAR & CELLULAR PROTEOMICS. 11(12). p.1682-1689
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The HUPO initiative on Model Organism Proteomes, iMOP

Alexandre ME Jones, Ruedi Aebersold, Christian H Ahrens, Rolf Apweiler, Katja Baerenfaller, Mark Baker, Emøke Bendixen, Steve Briggs, Philip Brownridge, Erich Brunner, et al.

(2012) PROTEOMICS. 12(3). p.340-345
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mzML: a community standard for mass spectrometry data

Lennart Martens (UGent) , Matthew Chambers, Marc Sturm, Darren Kessner, Fredrik Levander, Jim Shofstahl, Wilfred H Tang, Andreas Ropp, Steffen Neumann, Angel D Pizarro, et al.

(2011) MOLECULAR & CELLULAR PROTEOMICS. 10(1).
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- Miscellaneous
High-throughput proteomics and bioinformatics : joined at the hip

Lennart Martens (UGent) and Henning Hermjakob

(2010) PROTEOMICS. 10(6). p.1103-1104

Academic Bibliography

Proteomics Standards Initiative : fifteen years of progress and future work

Human proteome project mass spectrometry data interpretation guidelines 2.1

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

qcML: an exchange format for quality control metrics from mass spectrometry experiments

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report

PRIDE Inspector: a tool to visualize and validate MS proteomics data

The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

The HUPO initiative on Model Organism Proteomes, iMOP

mzML: a community standard for mass spectrometry data

High-throughput proteomics and bioinformatics : joined at the hip

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