Ghent University Academic Bibliography

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Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Bram Bloemen (UGent) , Maud Delvoye, Stefan Hoffman, Kathleen Marchal (UGent) , Kevin Vanneste (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2026) MSYSTEMS. 11(2).
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Filtering for truth : high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)

Alexander Van Uffelen (UGent) , Andrea Gobbo, Marie-Alice Fraiture, Andres Posadas Yabar (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sigrid C. J. De Keersmaecker and Kevin Vanneste

(2026) BMC GENOMICS. 27(1).
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Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Yari Van Laere (UGent) , Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2025) FRONTIERS IN MICROBIOLOGY. 16.
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Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere (UGent) , Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens and Kevin Vanneste

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 10.
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Detection of Bacillus production strains and contaminants in food enzyme products

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 11.
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Development of a shotgun metagenomics workflow for the comprehensive surveillance of biological impurities in vitamin-containing food products

Rik Orval (UGent) , Jolien D'aes, Sigrid C.J. De Keersmaecker, Kevin Vanneste, Dieter Deforce (UGent) , Nancy H.C. Roosens and Marie-Alice Fraiture

(2025) LWT-FOOD SCIENCE AND TECHNOLOGY. 231.
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Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) 9th Applied Bioinformatics and Public Health Microbiology, Abstracts.
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Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Bert Bogaerts, Marie-Alice Fraiture, Astrid Huwaert, Tom Van Nieuwenhuysen, Bram Jacobs (UGent) , Koenraad Van Hoorde, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

Jolien D'aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2021) FOODS. 10(11).
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Food Enzyme Database (FEDA) : a web application gathering information about food enzyme preparations available on the European market

Marie Deckers, Julien Van Braeckel, Kevin Vanneste, Dieter Deforce (UGent) , Marie-Alice Fraiture and Nancy H. C. Roosens

(2021) DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. 2021.

Academic Bibliography

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Filtering for truth : high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Detection of Bacillus production strains and contaminants in food enzyme products

Development of a shotgun metagenomics workflow for the comprehensive surveillance of biological impurities in vitamin-containing food products

Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

Food Enzyme Database (FEDA) : a web application gathering information about food enzyme preparations available on the European market

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