Academic Bibliography

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Discovering candidates for gene network expansion by distributed volunteer computing

Francesco Asnicar, Luca Erculiani, Francesca Galante, Caterina Gallo, Luca Masera, Paolo Morettin, Nadir Sella, Stanislau Semeniuta, Thomas Tolio, Giulia Malacarne, et al.

(2015) 2015 IEEE Trustcom/BigDataSE/ISPA, vol. 3. p.248-253
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Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

Stijn Spaepen, Stijn Bossuyt, Kristof Engelen, Kathleen Marchal (UGent) and Jos Vanderleyden

(2014) NEW PHYTOLOGIST. 201(3). p.850-861
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MAGIC: access portal to a cross-platform gene expression compendium for maize

Qiang Fu, Ana Carolina Elisa Fierro Gutierrez (UGent) , Pieter Meysman, Aminael Sanchez Rodriguez (UGent) , Klaas Vandepoele (UGent) , Kathleen Marchal (UGent) and Kristof Engelen

(2014) BIOINFORMATICS. 30(9). p.1316-1318
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COLOMBOS v2.0 : an ever expanding collection of bacterial expression compendia

Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal (UGent) , et al.

(2014) NUCLEIC ACIDS RESEARCH. 42(D1). p.D649-D653
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Identifying common structural DNA properties in transcription factor binding site sets of the LacI-GalR family

Pieter Meysman, Kathleen Marchal (UGent) and Kristof Engelen

(2013) CURRENT BIOINFORMATICS. 8(4). p.483-488
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Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles

Pieter Meysman, Aminael Sánchez-Rodríguez, Qiang Fu, Kathleen Marchal (UGent) and Kristof Engelen

(2013) MOLECULAR BIOLOGY AND EVOLUTION. 30(6). p.1302-1314
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Identifying differentially expressed genes in the absence of replication

Pushpke J Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal (UGent) and Dan Lin

(2013) INTERNATIONAL JOURNAL OF BIOINFORMATICS RESEARCH AND APPLICATIONS. 9(1). p.71-90
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Directed module detection in a large-scale expression compendium

Qiang Fu, Karen Lemmens, Aminael Sánchez-Rodríguez, Inge M Thijs, Pieter Meysman, Hong Sun, Ana Carolina Fierro, Kristof Engelen and Kathleen Marchal (UGent)

(2012) Bacterial molecular networks : methods and protocols. In Methods in Molecular Biology 804. p.131-165
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Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response

Sandra Van Puyvelde, Lore Cloots, Kristof Engelen, Frederik Das, Kathleen Marchal (UGent) , Jos Vanderleyden and Stijn Spaepen

(2011) MICROBIAL ECOLOGY. 61(4). p.723-728
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Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

Pieter Meysman, Hai Dang Thanh, Kris Laukens, Riet De Smet (UGent) , Yan Wu, Kathleen Marchal (UGent) and Kristof Engelen

(2011) NUCLEIC ACIDS RESEARCH. 39(2).

Academic Bibliography

Discovering candidates for gene network expansion by distributed volunteer computing

Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

MAGIC: access portal to a cross-platform gene expression compendium for maize

COLOMBOS v2.0 : an ever expanding collection of bacterial expression compendia

Identifying common structural DNA properties in transcription factor binding site sets of the LacI-GalR family

Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles

Identifying differentially expressed genes in the absence of replication

Directed module detection in a large-scale expression compendium

Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

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