Ghent University Academic Bibliography

Your filters: cql: author="Deutsch, Eric W." or (type any "bookEditor issueEditor" and editor="Deutsch, Eric W.")

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The Escherichia coli PeptideAtlas build : characterizing the observed Escherichia coli pan-proteome and its post-translational modifications

Caroline Jachmann (UGent) , Zhi Sun, Kevin Velghe (UGent) , Florence Arsène-Ploetze, Aurélie Hirschler, Jasper Zuallaert (UGent) , Christine Carapito, Robbin Bouwmeester (UGent) , Kay Nieselt, Eric W. Deutsch, et al.

(2026) JOURNAL OF PROTEOME RESEARCH. 25(2). p.1027-1041
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Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics

Aaron Wacholder, Eric W. Deutsch, Leron W. Kok, Jip T. van Dinter, Jiwon Lee, James C. Wright, Sebastien Leblanc, Ayodya H. Jayatissa, Kevin Jiang, Ihor Arefiev, et al.

(2026) NATURE COMMUNICATIONS. 17(1).
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The proteomics standards initiative standardized formats for spectral libraries and fragment ion peak annotations : mzSpecLib and mzPAF

Joshua Klein, Henry Lam, Tytus D. Mak, Wout Bittremieux, Yasset Perez-Riverol, Ralf Gabriels (UGent) , Jim Shofstahl, Helge Hecht, Pierre-Alain Binz, Shin Kawano, et al.

(2024) ANALYTICAL CHEMISTRY. 96(46). p.18491-18501
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ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Tobias G. Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric W. Deutsch

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.632-636
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Proteomics standards initiative at twenty years : current activities and future work

Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.287-301
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A comprehensive evaluation of consensus spectrum generation methods in proteomics

Xiyang Luo, Wout Bittremieux, Johannes Griss, Eric W. Deutsch, Timo Sachsenberg, Lev I. Levitsky, Mark V. Ivanov, Julia A. Bubis, Ralf Gabriels (UGent) , Henry Webel, et al.

(2022) JOURNAL OF PROTEOME RESEARCH. 21(6). p.1566-1574
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Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1189-1195
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Universal spectrum explorer : a standalone (web-)application for cross-resource spectrum comparison

Tobias Schmidt, Patroklos Samaras, Viktoria Dorfer, Christian Panse, Tobias Kockmann, Leon Bichmann, Bart Van Puyvelde (UGent) , Yasset Perez-Riverol, Eric W. Deutsch, Bernhard Kuster, et al.

(2021) JOURNAL OF PROTEOME RESEARCH. 20(6). p.3388-3394
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Universal Spectrum Identifier for mass spectra

Eric W. Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, et al.

(2021) NATURE METHODS. 18(7). p.768-770
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A proteomics sample metadata representation for multiomics integration and big data analysis

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, et al.

(2021) NATURE COMMUNICATIONS. 12(1).

Academic Bibliography

The Escherichia coli PeptideAtlas build : characterizing the observed Escherichia coli pan-proteome and its post-translational modifications

Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics

The proteomics standards initiative standardized formats for spectral libraries and fragment ion peak annotations : mzSpecLib and mzPAF

ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Proteomics standards initiative at twenty years : current activities and future work

A comprehensive evaluation of consensus spectrum generation methods in proteomics

Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

Universal spectrum explorer : a standalone (web-)application for cross-resource spectrum comparison

Universal Spectrum Identifier for mass spectra

A proteomics sample metadata representation for multiomics integration and big data analysis

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