Ghent University Academic Bibliography

Your filters: cql: author="De Maeyer, Dries" or (type any "bookEditor issueEditor" and editor="De Maeyer, Dries")

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- Miscellaneous
- open access
Viash : from scripts to pipelines

Robrecht Cannoodt (UGent) , Hendrik Cannoodt, Eric Van de Kerckhove, Andy Boschmans, Dries De Maeyer and Toni Verbeiren

(2021) ArXiv.
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A scalable SCENIC workflow for single-cell gene regulatory network analysis

Bram van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck (UGent) , Wouter Saelens (UGent) , Robrecht Cannoodt (UGent) , Quentin Rouchon (UGent) , et al.

(2020) NATURE PROTOCOLS. 15(7). p.2247-2276
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- Journal Article
- A1
- open access
IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations

Camilo Andrés Pérez Romero (UGent) , Bram Weytjens (UGent) , Dries Decap (UGent) , Toon Swings, Jan Michiels, Dries De Maeyer (UGent) and Kathleen Marchal (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(W1). p.W151-W157
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- Journal Article
- A1
- open access
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Michael P. Menden, Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan, Thomas Yu, Jaewoo Kang, Minji Jeon, Russ Wolfinger, et al.

(2019) NATURE COMMUNICATIONS. 10.
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- Journal Article
- A1
- open access
The Crabtree effect shapes the Saccharomyces cerevisiae lag phase during the switch between different carbon sources

Gemma Perez-Samper, Bram Cerulus, Abbas Jariani, Lieselotte Vermeersch, Nuria Barrajon Simancas, Markus MM Bisschops, Joost van den Brink, Daniel Solis-Escalante, Brigida Gallone, Dries De Maeyer, et al.

(2018) MBIO. 9(5).
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- PhD Thesis
Network-based omics data analysis

Dries De Maeyer (UGent)

(2016) 1314.
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- Journal Article
- A1
- open access
SSA-ME Detection of cancer driver genes using mutual exclusivity by small subnetwork analysis

Sergio Pulido Tamayo (UGent) , Bram Weytjens (UGent) , Dries De Maeyer (UGent) and Kathleen Marchal (UGent)

(2016) SCIENTIFIC REPORTS. 6.
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- Journal Article
- A1
- open access
Network-based analysis of eQTL data to prioritize driver mutations

Dries De Maeyer (UGent) , Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2016) GENOME BIOLOGY AND EVOLUTION. 8(3). p.481-494
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Simultaneous discovery of cancer subtypes and subtype features by molecular data integration

Thanh Le Van, Matthijs van Leeuwen, Ana Carolina Elisa Fierro Gutierrez (UGent) , Dries De Maeyer (UGent) , Jimmy Van den Eynden (UGent) , Lieven Verbeke (UGent) , Luc De Raedt, Kathleen Marchal (UGent) and Siegfries Nijssen

(2016) BIOINFORMATICS. 32(17). p.i445-i454
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- Journal Article
- A1
- open access
Elucidation of the mode of action of a new antibacterial compound active against Staphylococcus aureus and Pseudomonas aeruginosa

Evelien Gerits, Eline Blommaert, Anna Lippell, Alex J O'Neill, Bram Weytjens, Dries De Maeyer, Ana Carolina Fierro, Kathleen Marchal (UGent) , Arnaud Marchand, Patrick Chaltin, et al.

(2016) PLOS ONE. 11(5).

Academic Bibliography

Viash : from scripts to pipelines

A scalable SCENIC workflow for single-cell gene regulatory network analysis

IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

The Crabtree effect shapes the Saccharomyces cerevisiae lag phase during the switch between different carbon sources

Network-based omics data analysis

SSA-ME Detection of cancer driver genes using mutual exclusivity by small subnetwork analysis

Network-based analysis of eQTL data to prioritize driver mutations

Simultaneous discovery of cancer subtypes and subtype features by molecular data integration

Elucidation of the mode of action of a new antibacterial compound active against Staphylococcus aureus and Pseudomonas aeruginosa

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