Ghent University Academic Bibliography

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Your filters: cql: author="De Keersmaecker, Sigrid C. J." or (type any "bookEditor issueEditor" and editor="De Keers...

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First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

Carine Yehouenou, Bert Bogaerts (UGent) , Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Dissou Affolabi, Reza Soleimani, Hector Rodriguez-Villalobos, Francoise Van Bambeke, et al.

(2021) ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS. 20(1).
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts (UGent) , Stéphanie Nouws (UGent) , Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand, Qiang Fu, Florence Crombé, Denis Piérard, Kathleen Marchal (UGent) , et al.

(2021) MICROBIAL GENOMICS.
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A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

Mathieu Gand (UGent) , Wesley Mattheus, Nancy Roosens, Katelijne Dierick, Kathleen Marchal (UGent) , Sophie Bertrand and Sigrid C. J. De Keersmaecker

(2020) FOOD MICROBIOLOGY. 91.
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First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Cristina Garcia-Graells, Bas Berbers, Bavo Verhaegen, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens, Nadine Botteldoorn and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 324.
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Perceived utility and feasibility of pathogen genomics for public health practice : a survey among public health professionals working in the field of infectious diseases, Belgium, 2019

Nina Van Goethem, Marc J. Struelens, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Annie Robert, Sophie Quoilin, Herman Van Oyen (UGent) and Brecht Devleesschauwer (UGent)

(2020) BMC PUBLIC HEALTH. 20(1).
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Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia Saltykova (UGent) , Florence Buytaers (UGent) , Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(16).
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Strategy for the identification of micro-organisms producing food and feed products : bacteria producing food enzymes as study case

Marie Deckers, Kevin Vanneste, Raf Winand, Sigrid C. J. De Keersmaecker, Sarah Denayer, Marc Heyndrickx (UGent) , Dieter Deforce (UGent) , Marie-Alice Fraiture and Nancy H. C. Roosens

(2020) FOOD CHEMISTRY. 305.
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A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) MICROORGANISMS. 8(8).
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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

Stephanie Nouws, Bert Bogaerts, Bavo Verhaegen, Sarah Denayer, Denis Pierard, Kathleen Marchal (UGent) , Nancy H. C. Roosens, Kevin Vanneste (UGent) and Sigrid C. J. De Keersmaecker

(2020) SCIENTIFIC REPORTS. 10(1).
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Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Bas Berbers, Assia Saltykova (UGent) , Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Kathleen Marchal (UGent) , Raf Winand, Kevin Vanneste, Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2020) SCIENTIFIC REPORTS. 10(1).

Academic Bibliography

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Perceived utility and feasibility of pathogen genomics for public health practice : a survey among public health professionals working in the field of infectious diseases, Belgium, 2019

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Strategy for the identification of micro-organisms producing food and feed products : bacteria producing food enzymes as study case

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

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