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msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level
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Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model
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MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates
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Cytosolic isocitrate dehydrogenase from Arabidopsis thaliana is regulated by glutathionylation
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A community proposal to integrate proteomics activities in ELIXIR