Ghent University Academic Bibliography

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Universal Spectrum Identifier for mass spectra

Eric W. Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, et al.

(2021) NATURE METHODS. 18(7). p.768-770
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- Miscellaneous
- open access
Proteomics standards initiatives ProForma 2.0 unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2021) ARXIV.
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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692
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Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2018) JOURNAL OF PROTEOME RESEARCH. 17(12). p.4051-4060
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- Miscellaneous
Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Juan A Vizcaino, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, et al.

(2014) NATURE BIOTECHNOLOGY. 32(3). p.223-226
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TraML: a standard format for exchange of selected reaction monitoring transition lists

Eric W Deutsch, Matthew Chambers, Steffen Neumann, Fredrik Levander, Pierre-Alain Binz, Jim Shofstahl, David S Campbell, Luis Mendoza, David Ovelleiro, Kenny Helsens (UGent) , et al.

(2012) MOLECULAR & CELLULAR PROTEOMICS. 11(4).
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mzML: a community standard for mass spectrometry data

Lennart Martens (UGent) , Matthew Chambers, Marc Sturm, Darren Kessner, Fredrik Levander, Jim Shofstahl, Wilfred H Tang, Andreas Ropp, Steffen Neumann, Angel D Pizarro, et al.

(2011) MOLECULAR & CELLULAR PROTEOMICS. 10(1).
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Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

Martin Eisenacher, Lennart Martens (UGent) , Michael Kohl, Harald Barsnes, Kenny Helsens (UGent) , Jari Häkkinen, Fredrik Levander, Ruedi Aebersold, Joël Vandekerckhove (UGent) , Michael J. Dunn, et al.

(2009) PROTEOMICS. 9(15). p.3928-3933
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6th HUPO Annual World Congress : Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

Sandra Orchard, Lennart Martens (UGent) , Joshua Tasman, Pierre-Alain Binz, Juan Pablo Albar and Henning Hermjakob

(2008) PROTEOMICS. 8(7). p.1331-1333

Academic Bibliography

Universal Spectrum Identifier for mass spectra

Proteomics standards initiatives ProForma 2.0 unifying the encoding of proteoforms and peptidoforms

Proteomics Standards Initiative extended FASTA format

Expanding the use of spectral libraries in proteomics

Proteomics Standards Initiative : fifteen years of progress and future work

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

TraML: a standard format for exchange of selected reaction monitoring transition lists

mzML: a community standard for mass spectrometry data

Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

6th HUPO Annual World Congress : Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

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