Ghent University Academic Bibliography

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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692
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Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2018) JOURNAL OF PROTEOME RESEARCH. 17(12). p.4051-4060
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- Miscellaneous
Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Juan A Vizcaino, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, et al.

(2014) NATURE BIOTECHNOLOGY. 32(3). p.223-226
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TraML: a standard format for exchange of selected reaction monitoring transition lists

Eric W Deutsch, Matthew Chambers, Steffen Neumann, Fredrik Levander, Pierre-Alain Binz, Jim Shofstahl, David S Campbell, Luis Mendoza, David Ovelleiro, Kenny Helsens (UGent) , et al.

(2012) MOLECULAR & CELLULAR PROTEOMICS. 11(4).
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mzML: a community standard for mass spectrometry data

Lennart Martens (UGent) , Matthew Chambers, Marc Sturm, Darren Kessner, Fredrik Levander, Jim Shofstahl, Wilfred H Tang, Andreas Ropp, Steffen Neumann, Angel D Pizarro, et al.

(2011) MOLECULAR & CELLULAR PROTEOMICS. 10(1).
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Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

Martin Eisenacher, Lennart Martens (UGent) , Michael Kohl, Harald Barsnes, Kenny Helsens (UGent) , Jari Häkkinen, Fredrik Levander, Ruedi Aebersold, Joël Vandekerckhove (UGent) , Michael J. Dunn, et al.

(2009) PROTEOMICS. 9(15). p.3928-3933
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6th HUPO Annual World Congress : Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

Sandra Orchard, Lennart Martens (UGent) , Joshua Tasman, Pierre-Alain Binz, Juan Pablo Albar and Henning Hermjakob

(2008) PROTEOMICS. 8(7). p.1331-1333
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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Chris F Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, et al.

(2008) NATURE BIOTECHNOLOGY. 26(8). p.889-896
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The minimum information about a proteomics experiment (MIAPE)

Chris F Taylor, Norman W Paton, Kathryn S Lilley, Pierre-Alain Binz, Randall K, Jr Julian, Andrew R Jones, Weimin Zhu, Rolf Apweiler, Ruedi Aebersold, Eric W Deutsch, et al.

(2007) NATURE BIOTECHNOLOGY. 25(8). p.887-893

Academic Bibliography

Proteomics Standards Initiative extended FASTA format

Expanding the use of spectral libraries in proteomics

Proteomics Standards Initiative : fifteen years of progress and future work

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

TraML: a standard format for exchange of selected reaction monitoring transition lists

mzML: a community standard for mass spectrometry data

Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

6th HUPO Annual World Congress : Proteomics Standards Initiative Workshop 6-10 October 2007, Seoul, Korea

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

The minimum information about a proteomics experiment (MIAPE)

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