Ghent University Academic Bibliography

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Proteomics standards initiative at twenty years : current activities and future work

Eric W. Deutsch, Juan Antonio Vizcaíno, Andrew R. Jones, Pierre-Alain Binz, Henry Lam, Joshua Klein, Wout Bittremieux, Yasset Perez-Riverol, David L. Tabb, Mathias Walzer, et al.

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.287-301
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Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1189-1195
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Universal Spectrum Identifier for mass spectra

Eric W. Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, et al.

(2021) NATURE METHODS. 18(7). p.768-770
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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692
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Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2018) JOURNAL OF PROTEOME RESEARCH. 17(12). p.4051-4060
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- Miscellaneous
Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Juan A Vizcaino, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, et al.

(2014) NATURE BIOTECHNOLOGY. 32(3). p.223-226
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TraML: a standard format for exchange of selected reaction monitoring transition lists

Eric W Deutsch, Matthew Chambers, Steffen Neumann, Fredrik Levander, Pierre-Alain Binz, Jim Shofstahl, David S Campbell, Luis Mendoza, David Ovelleiro, Kenny Helsens (UGent) , et al.

(2012) MOLECULAR & CELLULAR PROTEOMICS. 11(4).
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mzML: a community standard for mass spectrometry data

Lennart Martens (UGent) , Matthew Chambers, Marc Sturm, Darren Kessner, Fredrik Levander, Jim Shofstahl, Wilfred H Tang, Andreas Ropp, Steffen Neumann, Angel D Pizarro, et al.

(2011) MOLECULAR & CELLULAR PROTEOMICS. 10(1).
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Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

Martin Eisenacher, Lennart Martens (UGent) , Michael Kohl, Harald Barsnes, Kenny Helsens (UGent) , Jari Häkkinen, Fredrik Levander, Ruedi Aebersold, Joël Vandekerckhove (UGent) , Michael J. Dunn, et al.

(2009) PROTEOMICS. 9(15). p.3928-3933

Academic Bibliography

Proteomics standards initiative at twenty years : current activities and future work

Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms

Universal Spectrum Identifier for mass spectra

Proteomics Standards Initiative extended FASTA format

Expanding the use of spectral libraries in proteomics

Proteomics Standards Initiative : fifteen years of progress and future work

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

TraML: a standard format for exchange of selected reaction monitoring transition lists

mzML: a community standard for mass spectrometry data

Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

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