Ghent University Academic Bibliography

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Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes

Robert Heyer, Maximilian Wolf, Dirk Benndorf, Sergio Uzzau, Jana Seifert, Lucia Grenga, Martin Pabst, Heike Schmitt, Bart Mesuere (UGent) , Tim Van Den Bossche (UGent) , et al.

(2025) MICROBIOME. 13(1).
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The microbiologist’s guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J Griffin, et al.

(2025) ChemRxiv.
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The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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Lignocellulose fermentation products generated by giant panda gut microbiomes depend ultimately on pH rather than portion of bamboo : a preliminary study

Alberto Scoma (UGent) , Way Cern Khor (UGent) , Marta Coma, Robert Heyer, Ruben Props (UGent) , Tim Bouts, Dirk Benndorf, Desheng Li, Hemin Zhang and Korneel Rabaey (UGent)

(2022) MICROORGANISMS. 10(5).
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Tim Van Den Bossche (UGent) , Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf and Lennart Martens (UGent)

(2021) BIORXIV.
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Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

Jo De Vrieze (UGent) , Robert Heyer, Ruben Props (UGent) , Lieven Van Meulebroek (UGent) , Karen Gille, Lynn Vanhaecke (UGent) , Dirk Benndorf and Nico Boon (UGent)

(2021) WATER RESEARCH. 202.
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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Tim Van Den Bossche (UGent) , Magnus Ø. Arntzen, Dörte Becher, Dirk Benndorf, Vincent G. H. Eijsink, Céline Henry, Pratik D. Jagtap, Nico Jehmlich, Catherine Juste, Benoit J. Kunath, et al.

(2021) MICROBIOME. 9(1).
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Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) BIORXIV.

Academic Bibliography

Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes

The microbiologist’s guide to metaproteomics

The microbiologist's guide to metaproteomics

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Lignocellulose fermentation products generated by giant panda gut microbiomes depend ultimately on pH rather than portion of bamboo : a preliminary study

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

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