Ghent University Academic Bibliography

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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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Lignocellulose fermentation products generated by giant panda gut microbiomes depend ultimately on pH rather than portion of bamboo : a preliminary study

Alberto Scoma (UGent) , Way Cern Khor (UGent) , Marta Coma, Robert Heyer, Ruben Props (UGent) , Tim Bouts, Dirk Benndorf, Desheng Li, Hemin Zhang and Korneel Rabaey (UGent)

(2022) MICROORGANISMS. 10(5).
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- Miscellaneous
- open access
Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Tim Van Den Bossche (UGent) , Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf and Lennart Martens (UGent)

(2021) BIORXIV.
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Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

Jo De Vrieze (UGent) , Robert Heyer, Ruben Props (UGent) , Lieven Van Meulebroek (UGent) , Karen Gille, Lynn Vanhaecke (UGent) , Dirk Benndorf and Nico Boon (UGent)

(2021) WATER RESEARCH. 202.
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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Tim Van Den Bossche (UGent) , Magnus Ø. Arntzen, Dörte Becher, Dirk Benndorf, Vincent G. H. Eijsink, Céline Henry, Pratik D. Jagtap, Nico Jehmlich, Catherine Juste, Benoit J. Kunath, et al.

(2021) MICROBIOME. 9(1).
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Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Tim Van Den Bossche (UGent) , Benoit J. Kunath, Kay Schallert, Stephanie S. Schäpe, Paul E. Abraham, Jean Armengaud, Magnus Ø. Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, et al.

(2021) BIORXIV.
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Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Kay Schallert, Harald Barsnes, Peter Dawyndt (UGent) , Dirk Benndorf, Bernhard Y. Renard, Bart Mesuere (UGent) , Lennart Martens (UGent) and Thilo Muth

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3562-3566
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Substrate-dependent fermentation of bamboo in giant panda gut microbiomes : leaf primarily to ethanol and pith to lactate

Alberto Scoma (UGent) , Way Cern Khor (UGent) , Marta Coma (UGent) , Robert Heyer, Ruben Props (UGent) , Jonas Schoelynck, Tim Bouts, Dirk Benndorf, Desheng Li, Hemin Zhang, et al.

(2020) FRONTIERS IN MICROBIOLOGY. 11.
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Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

Alberto Scoma (UGent) , Robert Heyer, Ridwan Muhamad Rifai, Christian Dandyk, Ian Marshall, Frederiek-Maarten Kerckhof (UGent) , Angeliki Marietou, Henricus TS Boshker, Filip JR Meysman, Kirsten G Malmos, et al.

(2019) ISME JOURNAL. 13(4). p.1004-1018

Academic Bibliography

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Lignocellulose fermentation products generated by giant panda gut microbiomes depend ultimately on pH rather than portion of bamboo : a preliminary study

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Substrate-dependent fermentation of bamboo in giant panda gut microbiomes : leaf primarily to ethanol and pith to lactate

Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

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